Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20015
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    29   0.41 
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   2.9  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    26   5.0  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    26   5.0  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   8.8  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    25   8.8  

>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 306 GELGEEGSKTRT-GSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYLDNAHSSLLSNAQ 479
           G  G + +  +T G+V +A  S   YG G Y        N +  T   NA ++   NAQ
Sbjct: 221 GSYGNDNTANKTRGAVSSAGYSGEGYGKGTYATDTTAEANRRAATGTRNARTTAQRNAQ 279


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -2

Query: 309 LLQLVRSRRSNVFEQVNPF-VSTFIITPHVSSLRTI 205
           LLQ++ S  +N  E+   F VST+I TP  +SLRT+
Sbjct: 583 LLQVISSYVTNCREEQGAFCVSTYISTPD-NSLRTL 617


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -1

Query: 388 PDP*KPAEFAAVYTLPVLVFDPSSPNSPSTCEIAPLKCL*ASESICEHVHNYP 230
           P P + ++F  V  LP+   + SSPN  S  EI P        S CE   + P
Sbjct: 285 PPPWRDSDFETVPKLPIFYPNSSSPNFFSLSEI-PFNRRGFRYSPCEAAKDLP 336


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 336 WFLIPPRPTLLQLVRSRRSNVFEQVNPFVS 247
           W L+ P P+ L+L  +R+ NV E+V  F S
Sbjct: 113 WHLLLPPPSTLELSENRQ-NVLERVKVFNS 141


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 188  VASLDFMVRKEETWGVIMNVLTNGFTCSKTFERRD 292
            V+++  + +K E   V +NVL+    C+K  E+RD
Sbjct: 1112 VSNISVLKKKTEDREVDINVLSEYRRCNKEAEKRD 1146


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = +2

Query: 32  ILSFISTLKCLDKSKP*DDYFCLPHYRHWLWPNLNFIKKKKTFTILEVRRTKVASLDFMV 211
           + + ++ L+C+        +F   H   +L+P LN + K K F  L  R T +  +  +V
Sbjct: 82  VCNALALLQCIASHPETRIHFLNAHITLFLYPFLNTLSKSKPFEYL--RLTSLGVIGALV 139

Query: 212 RKE 220
           + +
Sbjct: 140 KND 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,444
Number of Sequences: 5004
Number of extensions: 46990
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)