Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20013
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.098
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    29   0.52 
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    28   0.69 
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa...    26   3.7  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    26   3.7  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    25   4.9  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    25   4.9  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   4.9  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   6.5  
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot...    25   6.5  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    25   8.5  
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    25   8.5  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 31.1 bits (67), Expect = 0.098
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = +2

Query: 290 SKFSDVQFSQYWSSTCFLFLIASEHS*SHQGGDGIKPRAPFLSGNVLSATSINNLVSASA 469
           S +SD   SQ  SST F    +SE++ S      +   +   S  + S+TS+   +S+S+
Sbjct: 104 SSYSDPATSQLPSSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAILPSSTSVEVSISSSS 163

Query: 470 QTDSEP 487
            + S+P
Sbjct: 164 LSSSDP 169


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 3    YIENGLLRPEGFSGIRGIIILSGTVLGASLS 95
            ++   L+R  G  G+RG+++  G +LG S S
Sbjct: 1186 WVSEYLVRQAGLRGLRGVVVRPGYILGDSKS 1216


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = +2

Query: 38  QWHQRHNYSFRNST----RGKSVQELII**SREKTRRSFSKCTPESSNITPYHRRTDI 199
           QW QRH+ ++R ST    R +      +      TR+  S  TP+S + TP H + D+
Sbjct: 97  QWLQRHSPAYRFSTPAAKRPRRQPSSFLDVHASNTRKRGSPDTPDSGHSTP-HSKGDV 153


>SPCC1223.12c |meu10||GPI anchored cell surface protein
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 336 QVELQYCENCTSENFDLVTDAFKATSLYSXRKKQIAGNLFV 214
           Q +L    NC   N  ++ +   ATSL   R + I G+L +
Sbjct: 38  QNDLDVLSNCQVVNGSIIMNTSSATSLNFNRIETITGDLII 78


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 374 GIKNVRMQLKKENKLSSNIVRIVHLKIL 291
           GI+ V +  +KE +LSSN+V  V  KI+
Sbjct: 308 GIEGVAIHDQKEKELSSNLVSDVAKKII 335


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 264 TSLYSXRKKQIAGNLFVSLFPLMSVLLW 181
           TS  + R+ +  G  F+ LFPL+S L+W
Sbjct: 7   TSTTTSRRPRFWGFFFI-LFPLVSFLMW 33


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 172 NIRRFRCAFTETSSGFLPASL 110
           NIR  RC FT+  +  LP SL
Sbjct: 289 NIRHTRCEFTKQLTQLLPTSL 309


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +1

Query: 268  LESICNQIKIFRCTILTILELNLFSFFNCIRT 363
            + SI N ++  RCT++ +++++     NC+ T
Sbjct: 973  VSSITNIVRQGRCTLVALVQMHKILALNCLIT 1004


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 142  ETSSGFLPASL-NNQFLDRLAPSTVPERI 59
            +    F+  SL NN FL R++PS++ E +
Sbjct: 1004 KADKSFIYGSLQNNSFLSRVSPSSLEENV 1032


>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
           1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 247 KKKADSWKSFCLSISPNVCPSVVWRNIRR 161
           K + ++W   CLS  P +C  ++  +I R
Sbjct: 174 KNEQETWGGRCLSHHPTICSHILAASILR 202


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 313 LTILELNLFSFFNCIRTFLIPPRWRWNKAQSTIFKRKCFVSYL 441
           L +L +NL S FNC+   L  P  +    Q T   +  + ++L
Sbjct: 322 LLLLNMNLTSAFNCLANLLDKPFLQAVYTQDTSSLKSFYQTFL 364


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -2

Query: 393 IPSPPWWDQECSDAIKKRKQVEL-QYCENCTSENFDLVTDAFKATSLYSXRKKQIAGNLF 217
           I SP +WD+   DA+ +   +E  + C   T    D +    K   LY  R  Q++   F
Sbjct: 104 ITSPFYWDENKKDALLRGTVLESNEDCNEITQLWIDRIEPIIK---LYPNRFSQVSYEDF 160

Query: 216 VSLFPLM 196
           + +  +M
Sbjct: 161 LRMSAVM 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,989
Number of Sequences: 5004
Number of extensions: 42223
Number of successful extensions: 122
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)