Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30007
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   1.4  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    25   5.5  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   5.5  

>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 88   TKYFYYLYFSTKRR*QPMTIQ*TNLFHK 5
            ++ F Y+Y ST+R  Q + I  T++ HK
Sbjct: 938  SRMFSYIYVSTERMCQDVVISTTSILHK 965


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 417 QKARLPKWFGERP 379
           QK RLP+W G+ P
Sbjct: 84  QKDRLPRWIGDNP 96


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 137 SYSFVTNPLTYCYYNMNKI 81
           SY+ V    +YCY+++NK+
Sbjct: 183 SYNVVNGWYSYCYHSLNKL 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,062,439
Number of Sequences: 5004
Number of extensions: 13192
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)