Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30006
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    29   0.89 
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    29   1.2  
SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase |Schizosacchar...    28   2.1  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    27   4.7  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   8.3  

>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 629 NCFTIRYIYGFSLKVLRCLAESYFASTR*LNIMISNGTWFLITNRQYVFF 480
           N FT   I G++L  L C+  +Y AS   + I+  N   FL+     +F+
Sbjct: 167 NIFTFNGIAGYALAALACIWCTYAASAMFVGILQVNNMRFLVAYPIALFY 216


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 323 TYNKNRDNHGYSNNKDITGGSRYCYSGG 406
           +Y++  D+  YS+NK  TGG+    SGG
Sbjct: 101 SYSRRHDDSSYSSNKYSTGGNDSYSSGG 128


>SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
 Frame = -3

Query: 871 LDSIGISGVFSLTAATLYLGFKLALII*ITSGGLSFLS-NACVVITRLLSADRLF*IDST 695
           +D++  S + +  AA L     L LI   T+  +S     A V ITR  + D L  +D+T
Sbjct: 121 VDNVDTSDLAAFEAA-LRPDTNLVLIESPTNPRISICDIRAIVKITRSKAKDALLVMDNT 179

Query: 694 VMNPSETAAPTDIGFVVECETVTVLL 617
           +++P     P D G+ +  E+ T  L
Sbjct: 180 MLSP-VLCNPLDFGYDIVYESATKYL 204


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 432 PLDVAYGRGLIDPVSYKKYVLSVSD 506
           PL  AY   L  P+S+K+Y L+ S+
Sbjct: 460 PLGPAYVPSLFTPISFKQYFLNTSN 484


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = +3

Query: 63  YIDNSG-NKFTLADAAKVGL--IAVVGAPLVAASKVIQVVRSTMVVDPQTGEKLPMEVAY 233
           +ID  G ++F L D +++     +  G PL      + ++ +T  V   TGE LP E + 
Sbjct: 439 HIDPMGPSRFVLMDPSRMFYWDSSAKGLPLTLDDSSL-ILDTTFRVLAITGEGLPHEFSI 497

Query: 234 ERGLVDPDTYKRYEEEI 284
            RG V     K+Y   I
Sbjct: 498 PRGYVYLSEIKQYSSLI 514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,347,961
Number of Sequences: 5004
Number of extensions: 65559
Number of successful extensions: 182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)