Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0024
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subu...    28   1.2  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    27   2.0  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    27   3.5  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    26   4.7  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   6.2  

>SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subunit
           Rpc25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 235 SDIT*IHNSETFKLVKFTDQERANNFFFNEILNDVGQADCIF 110
           SDI  IH S  +K  K    E  +  + N+++ ++G A C++
Sbjct: 8   SDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVY 49


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
 Frame = -2

Query: 219 YTTVKLSSL*NSLIKNEQIIFFLMKF*MMLDKQIVFFLGFRYRLS-LTELKHE---QRST 52
           Y T ++ S  N+L+K   +I  +++  + LD  +   L   Y+LS L E + E   Q S 
Sbjct: 86  YATKQMISQLNNLVKETDVIEDMLREDLELDSDMPNLLRAHYKLSKLREFREEALYQASL 145

Query: 51  NGQVNM 34
            GQ ++
Sbjct: 146 EGQSDL 151


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 19/81 (23%), Positives = 34/81 (41%)
 Frame = +3

Query: 270 IIILDNGRNVANADEKDKKSFYEMARECAARIIETKILSQAKNSYVGVILLGSKNTKNSV 449
           + +LD G+++         S  E         +  K L+  K   VG++     +TKN +
Sbjct: 8   VFVLDLGKDMGTCHHGRSHSDLEWTLSYFHDELSHKFLANRKTDVVGIVGYKCDDTKNDL 67

Query: 450 XXQAPGEFKHIELLSALQTPL 512
             Q    + +I +L  +QT L
Sbjct: 68  AEQE--AYWNISVLYPIQTAL 86


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +3

Query: 273 IILDNGRNVANADEKDKKSFYEMARECAARIIETKILSQAKNSY 404
           ++LD G N+ N + K  K+ + ++ +    I  T I+++  + Y
Sbjct: 653 VVLDEGHNIRNRESKTAKACHSISSQNRWVITGTPIVNKLDDLY 696


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 715  KPIQDPVVFPSGSYSV 668
            KPI+ PV F +G YSV
Sbjct: 1533 KPIEQPVEFENGGYSV 1548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,908
Number of Sequences: 5004
Number of extensions: 51861
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)