Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0022
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    27   2.3  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   4.1  
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    25   7.1  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    25   9.4  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   9.4  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   9.4  

>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -1

Query: 177 PRSLPNLGWNLNIALVVKCSRVSSRICTDYISSEIQNYYESNFLKKLT 34
           P SL  L W++  A V    RVS  I  + +SS++ + + +N LK L+
Sbjct: 752 PDSLSGLYWSVKSAGVRASRRVSRNIEGESVSSDLDDIF-ANVLKGLS 798


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 322 HGPVHPAIEDHAQSLLKLLV 263
           H P HP +ED AQ L KL V
Sbjct: 122 HDPDHPTLEDVAQMLGKLKV 141


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = +1

Query: 316 DRESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHD 465
           +R  SP   W+      + LP P +N      P    A+ P   S +Y D
Sbjct: 38  ERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLYRD 87


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 319 RESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHP 438
           R  SP+S  S+      VLP   S  + +P  Y+  +++P
Sbjct: 109 RNQSPISRKSSCVTCSTVLPLEFSVPDVQPRLYTNSSTNP 148


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 286 VRDPRLLDELDRESSPVSSWSNVG 357
           V D    DELD+ SSP SS S+ G
Sbjct: 681 VEDDSPFDELDKFSSPFSSSSSRG 704


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 216 VRTCRQKQHSHSLPRSLPNLGWNLNIALVVK 124
           V  C++K H  +LP  L N  + L+  LV++
Sbjct: 548 VIVCKRKNHKENLPAQLANGIYRLDDTLVLE 578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,494
Number of Sequences: 5004
Number of extensions: 57652
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)