Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0016
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    45   1e-05
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    41   2e-04
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    34   0.023
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy...    29   0.50 
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    27   2.7  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    27   3.5  

>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 22/61 (36%), Positives = 38/61 (62%)
 Frame = +1

Query: 322 FTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPDVGWPDCFNSGVFVFKPSN 501
           FTK+  +  TQ++K   LD+D+LV++N D++F+   +  +P    PD F+  +F  KP +
Sbjct: 166 FTKLSVFEQTQFDKVCILDSDLLVLKNMDDIFDTPYVYESP--AEPDMFSFPIFK-KPDD 222

Query: 502 E 504
           E
Sbjct: 223 E 223


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 20/58 (34%), Positives = 35/58 (60%)
 Frame = +1

Query: 274 DAAHLALLQRPELGITFTKIHCWNLTQYEKCVFLDADILVIQNCDELFEREELSAAPD 447
           D   +ALL      + FTK+  + + +Y++  FLD+DIL I+  D++F+  +LS + D
Sbjct: 142 DVNDIALLDS-RWSMMFTKLRVFEMYEYDRICFLDSDILPIKKMDKVFDVHQLSYSKD 198


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 33.9 bits (74), Expect = 0.023
 Identities = 11/33 (33%), Positives = 24/33 (72%)
 Frame = +1

Query: 322 FTKIHCWNLTQYEKCVFLDADILVIQNCDELFE 420
           F+K+  +   Q++K   +D+DIL+++N D++F+
Sbjct: 161 FSKLRIFEQIQFDKICVIDSDILIMKNIDDIFD 193


>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 170 YPAVALITPTVSEAMRDRLRAVFSEVVTETFWTQETRL 283
           +P   L+ P  S   R+ +  VF++V  E  W +ET+L
Sbjct: 46  FPLPTLVIPAESTTYREVVEDVFAKVEQEHPWVKETKL 83


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = -1

Query: 277 RLLSPERLRDYFGENCAKTIPHSFTDGRCDECYGRVH-RTGAAER-MGQHQSSQAVGVV 107
           R+LSP R  D+  E   +    S   G  D C   +H      ER +GQH S   V  V
Sbjct: 230 RILSPIRSHDFSIETITRADSDSLYVGGSDGCIRLLHILPNKYERIIGQHSSRSTVDAV 288


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 146 SLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTET 259
           +LR+A +  P V +   TV+E +RD    V + VVT +
Sbjct: 112 NLRKALTSTPNVTVTEATVNELLRDETGEVITGVVTSS 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,114
Number of Sequences: 5004
Number of extensions: 51843
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)