Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0004
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    28   0.77 
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    27   1.4  
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    27   1.8  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   5.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   7.2  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   9.5  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 339 AHRVVLAANSPYFQSILADV-PMDHCSILFPGVKDFEMRALLEYMY 473
           AH+  LAA S YF+S  + + P +H   +    K+FE  ++L Y+Y
Sbjct: 180 AHKFYLAARSSYFKSKFSKLGPSEHEIEVKHFAKEFE--SILRYLY 223


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -3

Query: 241 DSILNRKFVDLRYSPFFSIALHKNRIRAPILLMRYECTCIDESYENVCTVTR 86
           +S L RK +   +SP F++ L K R+R    L ++   C+   Y +  ++ +
Sbjct: 650 NSKLTRKVLYYLFSPLFTLELWKLRVRG--ALSKFPTNCLRSVYSHTVSLMK 699


>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 193 FSIALHKNRIRAPILLMRYECTCIDESYENVCT 95
           FSI   K     P LL   +CTCI ES+E + T
Sbjct: 88  FSIKKRKPHNHIPQLLE--QCTCIAESFEGIYT 118


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 480 HPCTYIQGALSFRNP*PPETEYCNDPWAHRLIWIG 376
           H C  +   L F +    ETEY   PW+  L+ +G
Sbjct: 288 HSCKLLYALLQFNH----ETEYLIQPWSDCLVDVG 318


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 135  NVHV*MSHMKMFALSLESFNHVRGCFALI 49
            +VH    H K+F  + +S N ++ C  L+
Sbjct: 1368 SVHTSFQHFKLFTNTKQSLNQLKDCTLLL 1396


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 348  VVLAANSPYFQSILADVPMDHCSIL 422
            V+LA + PYF+S+ +D     C IL
Sbjct: 1101 VILAIHDPYFESMQSDFIRLACIIL 1125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,169
Number of Sequences: 5004
Number of extensions: 46932
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)