Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0002
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    25   5.0  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   5.0  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 331 HPFCWFWVRMSPALLMSPLLCPFIVIF 251
           HP   FWV+M P  L+       +V+F
Sbjct: 83  HPAFSFWVQMHPWFLILNFFISLVVLF 109


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 265 TDTAMATSTALETSSPRTS 321
           + TA+ +STAL TS+P TS
Sbjct: 704 SSTAITSSTALNTSTPITS 722



 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 265  TDTAMATSTALETSSPRTS 321
            + TA+ +STAL TS+P TS
Sbjct: 1016 SSTAITSSTALNTSTPITS 1034



 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 265  TDTAMATSTALETSSPRTS 321
            + TA+ +STAL TS+P TS
Sbjct: 3320 SSTAITSSTALNTSTPITS 3338



 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 265  TDTAMATSTALETSSPRTS 321
            T T + +STAL TS+P TS
Sbjct: 1124 TSTPITSSTALNTSTPITS 1142



 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 265  TDTAMATSTALETSSPRTS 321
            T T + +STAL TS+P TS
Sbjct: 2768 TSTPITSSTALNTSTPITS 2786


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,602,069
Number of Sequences: 5004
Number of extensions: 28923
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)