SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0027
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    33   0.032
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    31   0.23 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    31   0.23 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.52 
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    29   0.91 
SPCC1393.12 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.6  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   1.6  
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    27   2.1  
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    27   2.1  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   2.8  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   2.8  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    27   3.7  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    26   4.9  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    26   4.9  
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    26   6.4  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    26   6.4  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    25   8.5  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   8.5  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   8.5  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    25   8.5  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    25   8.5  

>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 33.5 bits (73), Expect = 0.032
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = +1

Query: 262 GTAKDTVATTLNTTVDATKSVASSAVEKGTSLIGTAKDT--VANTVSTTVDTTKNVAASA 435
           G  K T   +   T  A +   S+  E    L G + +T    N  ++T DT  N  ASA
Sbjct: 552 GETKSTPKKSKKKTSKAQQEANSTTAEGKEKLSGDSTETGNSTNKEASTEDTKANATASA 611

Query: 436 VEKGTSLIETAKDTVAQTVDKTKTELHQQLIQ 531
             K    +ET +  V + + + +     ++IQ
Sbjct: 612 PNKKKKTVETLQQQVIKEIARKEIPRVYKIIQ 643


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 24/90 (26%), Positives = 42/90 (46%)
 Frame = +1

Query: 265 TAKDTVATTLNTTVDATKSVASSAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEK 444
           T  D + + + T +  T+S  SS  +K TS      DT+     +++   K  A  +  K
Sbjct: 164 TNTDPIPSPIITNLK-TESSKSSGAKKATSN-AKITDTMLFNHFSSIQKPKLKAEGSTLK 221

Query: 445 GTSLIETAKDTVAQTVDKTKTELHQQLIQA 534
           G +L +T +DT     ++ K   H+ L+ A
Sbjct: 222 GQALKKTLEDTWNNLTEEEKKPYHEGLLAA 251


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = +1

Query: 265 TAKDTVATTLNTTVDAT---KSVASSAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASA 435
           T+    +++LN+T  AT    S++S+A     +    A  ++ +T S T   T +  +S 
Sbjct: 191 TSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSAT--ATSSSISST 248

Query: 436 VEKGTSLIETAKDTVAQTVDKTKT 507
           V   T L  +   T A +   T +
Sbjct: 249 VSSSTPLTSSNSTTAATSASATSS 272



 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/71 (21%), Positives = 39/71 (54%)
 Frame = +1

Query: 265 TAKDTVATTLNTTVDATKSVASSAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEK 444
           T+    +++L ++   + S+ASS++   TS    +    +++++++  T+ ++A+S+   
Sbjct: 110 TSSSATSSSLASSSTTSSSLASSSI---TSSSLASSSITSSSLASSSTTSSSLASSSTNS 166

Query: 445 GTSLIETAKDT 477
            TS   T+  T
Sbjct: 167 TTSATPTSSAT 177


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 17/77 (22%), Positives = 40/77 (51%)
 Frame = +2

Query: 8   VDATKNVAASAIEKGTTAIGSAKETVANTVSTTVDATKNVAAAVVEKGSTIVGTAKDTLA 187
           ++ T ++++++    T+   SA  T++   + TV +  +    +   G+T V T   T  
Sbjct: 349 LNPTSSISSTSSSSSTS---SAISTISQDHTKTVTSVSDEPTTITASGATSVTTTTKTDF 405

Query: 188 NTVHTTVDTTKNVAAST 238
           +TV TT+ +T  + +++
Sbjct: 406 DTVTTTIVSTSTLISAS 422



 Score = 29.1 bits (62), Expect = 0.69
 Identities = 22/84 (26%), Positives = 40/84 (47%)
 Frame = +1

Query: 256  LIGTAKDTVATTLNTTVDATKSVASSAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASA 435
            + G+   ++AT  + T   T SV  +AV   +S+ GTA  T+A   S     + + A+ +
Sbjct: 1074 ITGSLSSSIATA-SVTGSPTSSV--TAVSSTSSVEGTASSTIAAAASAAT-LSSDAASGS 1129

Query: 436  VEKGTSLIETAKDTVAQTVDKTKT 507
                +S   ++  + A T D + T
Sbjct: 1130 STVTSSATASSSSSAATTADSSVT 1153


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 24/84 (28%), Positives = 30/84 (35%)
 Frame = +1

Query: 262  GTAKDTVATTLNTTVDATKSVASSAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVE 441
            GTA  T    +NT       V  +    GT+   T   T      TT  T      + V 
Sbjct: 1126 GTATGTTTVVINTPTTTGSEVLPTTGATGTAGTETQLTTATEVQPTTGATGTAGTETQVT 1185

Query: 442  KGTSLIETAKDTVAQTVDKTKTEL 513
             GT   ET   T  +T   T TE+
Sbjct: 1186 TGT---ETQATTATETQATTATEV 1206


>SPCC1393.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 108

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 340 EKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIETAK 471
           EK  S + + K+ V + +    +  KNV + A  KGT   E  K
Sbjct: 58  EKAKSYLQSGKERVVDELDKPRENVKNVLSEAQAKGTEQAEALK 101


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
 Frame = +1

Query: 277  TVATTLNTTVDATKS--VASSAVEKGTSLIGTAKDTVANTV---STTVDTTKNVAASAVE 441
            T +TTLNT+   T S  + SS     +S++ ++    +++V   ST + ++  V  S   
Sbjct: 3205 TSSTTLNTSTPITSSSVLNSSTAITSSSVLNSSTPITSSSVLNSSTPITSSTVVNTSTPI 3264

Query: 442  KGTSLIETAKDTVAQTVDKTKTEL 513
              +S++ ++    + TV  T T +
Sbjct: 3265 TSSSVLNSSTPITSSTVVNTSTPI 3288



 Score = 27.1 bits (57), Expect = 2.8
 Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
 Frame = +1

Query: 277  TVATTLNTTVDATKSV---ASSAVEKGTSLIGTAKDTVANTV--STTVDTTKNVAASAVE 441
            T +TTLNT+   T S    +S+A+   T+L  +   T ++ +  ST + ++  + +S   
Sbjct: 3301 TSSTTLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTAITSSSILNSSTPV 3360

Query: 442  KGTSLIETAKDTVAQTVDKTKTEL 513
              +S++ ++    + TV  + T +
Sbjct: 3361 TSSSVLNSSTPITSSTVVNSSTPI 3384


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +2

Query: 2   ATVDATKNVAASAIEKGTTAIGSAKETVANTVSTTVDATKN 124
           +T+DA K++   A+EKG  AI   KE     VS +V A  N
Sbjct: 286 STLDAKKSLTDKALEKGLMAI--TKERFNKRVSPSVYAPTN 324



 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 292 LNTTVDATKSVASSAVEKGTSLIGTAKDTVANTVSTTVDTTKN 420
           L +T+DA KS+   A+EKG  L+   K+     VS +V    N
Sbjct: 284 LLSTLDAKKSLTDKALEKG--LMAITKERFNKRVSPSVYAPTN 324


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = +2

Query: 5   TVDATKNVAASAIEKGTTAIGSAK-ETVANTVSTTVDATKNVAAAVVEKGSTIVGTAKDT 181
           T  +T   AAS       ++   K E  ++TV+ +   T+ VAAA      T   +    
Sbjct: 77  TSTSTPKSAASPAPNPPASVPEKKVEAPSSTVAESTSTTQTVAAAAPSNPDTTATSEAPI 136

Query: 182 LANTVHTTVDTTKNVAA-STVEKG 250
            ANT+   V   +NVA  + VE G
Sbjct: 137 DANTL--AVGAQRNVAVENMVEMG 158


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +1

Query: 274 DTVATTLNTTVDATKSVASSAVEKGT-SLIGTAKDTVANTVSTTVDTTKNVAASAVEKGT 450
           D  ++ ++T   A+ +V+SS V+ GT +   + KD   +    +V T+ N AAS    GT
Sbjct: 200 DLPSSEISTKAPASTTVSSS-VDPGTINEDSSMKDHTTSNEQASVLTSANTAASTNTNGT 258

Query: 451 S 453
           +
Sbjct: 259 A 259


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/68 (25%), Positives = 26/68 (38%)
 Frame = +2

Query: 14  ATKNVAASAIEKGTTAIGSAKETVANTVSTTVDATKNVAAAVVEKGSTIVGTAKDTLANT 193
           +T+    S      T+I     T  N+ +TTV  T ++        +T + T   T   T
Sbjct: 53  STETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPT 112

Query: 194 VHTTVDTT 217
            H    TT
Sbjct: 113 THVNSTTT 120


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +1

Query: 286 TTLNTTVDATKSVASSAVEKGTSLIGTAKDTVANTVSTTVDTTKNVAASAVEKGTSLIET 465
           + + + V A  +V   A     S  G AK+  A T +   +TT +VAAS     +S +  
Sbjct: 34  SVVTSKVYAYTTVTLEAAASAISTNGAAKE--AATAAGDAETTSSVAASVTPAASSSVAA 91

Query: 466 AKDTVAQT 489
           +   VA +
Sbjct: 92  SVTPVASS 99


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 704 GCSYVLRCVYGFSQRAFSTVNERRSFVICRSRCIFGQ 594
           G  Y  R + GFS   +  VN++  F  C+   I  Q
Sbjct: 190 GTPYSYRFMDGFSSHTYKFVNDKGEFYYCKWHFITNQ 226


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +2

Query: 35  SAIEKGTTAIGSAKETVANTVSTTVDATKNVAAAVVEKGSTIVGTAKDTLANTVHTTVD 211
           ++IEK +T+I ++  T    V+TTVD +++           +  T  D  A    T  D
Sbjct: 251 ASIEKESTSIRNSTVTNDRVVNTTVDVSQSQTVETSGPSKEVPTTQPDASAAKPRTEFD 309


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 20  KNVAASAIEKGTTAIGSAKETVANTVSTTVDATKNVAAA 136
           KNV     EK +T     +E V+NT S  ++AT N ++A
Sbjct: 73  KNVQQQNPEKISTLQQVKEEEVSNTFSAPLNATGNFSSA 111


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 160 CGNSKRYACKHRSHHCRYYEKC 225
           C   + Y C  RSHHC    KC
Sbjct: 99  CEKCQEYKCD-RSHHCSQCNKC 119


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 134 AVVEKGSTIVGTAKDTLANT 193
           AV  KGST VG++ DTL+ +
Sbjct: 5   AVASKGSTNVGSSTDTLSTS 24


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1220

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 20/80 (25%), Positives = 31/80 (38%)
 Frame = +2

Query: 5   TVDATKNVAASAIEKGTTAIGSAKETVANTVSTTVDATKNVAAAVVEKGSTIVGTAKDTL 184
           TV  T  V   A    T+ + S  +    T++T    T +    V+E  +  V T   + 
Sbjct: 673 TVSGTVEVIEPAAGTVTSTVYSGTQEYTTTLATA-SGTVSGTVEVIEPAAGTVTTTVYSG 731

Query: 185 ANTVHTTVDTTKNVAASTVE 244
                TT+ T     + TVE
Sbjct: 732 TQEYTTTLATASGTVSGTVE 751


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 510 LSFRFIYSLCDCVFGGFN 457
           LS  FIY L   VFG FN
Sbjct: 536 LSIEFIYQLATIVFGWFN 553


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
 Frame = +1

Query: 259 IGTAKDTVATTLNTTVDATKSVASSAVEKGTSL------IGTAKDTVANTVSTTVDTTKN 420
           +GT+   +   LN   DA  SV  S   K TSL      +   +  V   +   +   KN
Sbjct: 1   MGTSGIEIFAALNDFTDAIVSVPESVCGKFTSLKEIDAQVRDIRQNVIQEIGVVLKNEKN 60

Query: 421 VAASAVEKGTSLIETAKDTVAQTVDK 498
              S  E+   L +T K+ +  +  K
Sbjct: 61  DELSGEERCERLQKTLKEILPYSDSK 86


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 537 SYAGAAKDTVANTVHSTVNLTKNAAASTYDK 629
           S+ G  K   A  + ST+N TK+  AST+ +
Sbjct: 366 SFKGLMKKMKAEELCSTLNCTKDELASTFSE 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,223,045
Number of Sequences: 5004
Number of extensions: 37229
Number of successful extensions: 192
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -