Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0025
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.4  
SPCC4G3.06c |mrpl4||mitochondrial ribosomal protein subunit L4|S...    27   2.4  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    27   2.4  
SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|c...    26   5.6  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    26   5.6  

>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +2

Query: 569 IHISKSVILPIKDMSI-SYCH*TNPINLQL 655
           ++ SKS+I+P KD+SI +Y    NPI L++
Sbjct: 195 LYFSKSLIVPRKDVSIVTYSLQKNPITLKI 224


>SPCC4G3.06c |mrpl4||mitochondrial ribosomal protein subunit
           L4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 144

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 138 LNWRYACSLNVIWYLCWKTKLLIFLQK 58
           L W+    L+ +WY C + K L+F Q+
Sbjct: 66  LRWKSFNDLHGLWYNCLREKNLLFTQR 92


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 372 WIDQLLYMLT-KPYCRVCGCSVSLAPAALDACRPSPTYVSRSAPDSLHSLYTKSVTICDQ 548
           WI++LL+ +T K   +     ++L PA+LD+ +  P Y+  +   +L     K+  I  Q
Sbjct: 171 WIERLLHGITEKEELQHIYKILTLTPASLDSFQNRPPYIGITTFPNLQHCIKKNQPILKQ 230

Query: 549 IAA 557
             +
Sbjct: 231 FTS 233


>SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 385 CYIC--LLSHTAEYADALSRSHLQHWTRAVPL 474
           CY C  +++ T E+     + + + WTR++PL
Sbjct: 18  CYYCFEVVAATLEHRKVRDKWNAKSWTRSIPL 49


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 442 HLQHWTRAVPLPPMSV 489
           HL HW +A+ +PP+ +
Sbjct: 376 HLIHWRKAIAIPPLLI 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,437
Number of Sequences: 5004
Number of extensions: 49834
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)