Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0019
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   147   1e-36
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.5  
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom...    25   7.8  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  147 bits (356), Expect = 1e-36
 Identities = 63/85 (74%), Positives = 78/85 (91%)
 Frame = +2

Query: 254 LDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 433
           +D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRG
Sbjct: 68  VDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRG 126

Query: 434 AIILAKLSVLPVRRGYWGNKIGKPH 508
           AII+ KLS++P+RRGYWG  +G PH
Sbjct: 127 AIIMGKLSIMPIRRGYWGTALGDPH 151



 Score =  101 bits (242), Expect = 1e-22
 Identities = 43/59 (72%), Positives = 52/59 (88%)
 Frame = +1

Query: 511 VPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFAK 687
           VP KV+GKCGSVTVRL+PAPRG G+V+APV K+ LQ+AG++DCYT +RGST TLGNF K
Sbjct: 153 VPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNFVK 211



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 27/41 (65%), Positives = 37/41 (90%)
 Frame = +3

Query: 135 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIV 68


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 132 RAHDHGRDHDRVHEDRHGLYLHRVIRIRRENRHVHRLEQRPP 7
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 274 RAEEEIKISNSLIGKENK*MLSSLSIFPSRTR 179
           R+EE+I+++NSL+ K N   +  LSI   R +
Sbjct: 225 RSEEQIQLANSLLQKLNACKILFLSIKKRRIK 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,923
Number of Sequences: 5004
Number of extensions: 59652
Number of successful extensions: 165
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)