Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0016
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    29   0.89 
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    28   1.6  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    27   2.1  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    27   3.6  
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ...    25   8.3  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   8.3  

>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 248 HHSQHRSHKYRSSRGHHEHPDTVP 319
           +H   RS  YRS R H+++ DT P
Sbjct: 331 YHPDSRSDSYRSKREHYDNRDTGP 354


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 503 QFSVYKNAN*VAMFTLELPLYFHCHLRIRLQDRQ 402
           QFSV KN   + MF   LP Y+H H+ I   D +
Sbjct: 222 QFSVDKNQ--LKMFVHYLPSYYHLHVHILHVDHE 253


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 221 QTPRSACSLHHSQHRSHKYRSSRGHHEH 304
           ++  S  + HH+ H S K     GHH H
Sbjct: 275 KSSESGSTNHHNNHESDKDLHHEGHHHH 302


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 273 LCDRCCEWCKLQADRGVCVSLQYTMT 196
           LCD+  +W +   D G  +S  YT T
Sbjct: 445 LCDQVSDWDRTLVDNGALISKLYTET 470


>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -1

Query: 704 IIPQDKWVTDKKVSEINKTILP 639
           +IP+D+ +++++  E+ K ILP
Sbjct: 203 VIPEDEMLSEEEEQEVEKQILP 224


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 278 CIYAI-DVVSGVNCRPIVASVFLFSIQ 201
           C+ A+ +  SGVNC  ++  VF F+ +
Sbjct: 825 CVSAVREACSGVNCHDLIYHVFSFAAE 851


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,299
Number of Sequences: 5004
Number of extensions: 57380
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)