Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0001
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    28   1.2  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    28   1.2  

>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +1

Query: 223 SLNLSKLECNIASLETFYILCKNSKSNHFVKFSAHDFQRN*VRRRPFFLSAKKPPGKYHN 402
           ++ LS+  C I SLE   I+C +S    F+   +    RN +    F  +AK    K  N
Sbjct: 753 NIKLSEKLCEICSLEVGPIVCYSSLKVLFLLLLSDMRDRNCIFTNIFLKAAKVAKQKNGN 812

Query: 403 PFL 411
            FL
Sbjct: 813 SFL 815


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 100 QSNSHRV*ESASLSRPTEKIKGKTQWVVARLHGSS 204
           Q NS+RV  S + S P   + G T+W+  ++HG S
Sbjct: 348 QKNSNRVIRSFTASDPF--MIGDTEWISCKVHGQS 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,829
Number of Sequences: 5004
Number of extensions: 59533
Number of successful extensions: 123
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)