Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0072
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   3.3  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    25   5.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.7  

>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +2

Query: 281 YITFIFHSLSKLLSLQKYPNV*KYSGQKLKSSPRRVR*RHSAV 409
           +I F+FHSL  +    KY +  +  GQ + ++   +   ++A+
Sbjct: 197 FINFVFHSLLAVFFSSKYTSYAQKEGQPILNATENLEVEYNAL 239


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 108 KNLRNKNKIFNYIR*QHRISSTFRIINFVQLVYIITYFIFKI 233
           K+ RN   +F+ ++   +I STF I  F Q  + ITY  F I
Sbjct: 178 KDPRNLMLVFSMLK---KILSTFPIDGFEQQFFDITYCYFPI 216


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 191  RTASLHHYVLYI*NKSIQINNCIALRSINIYITFIFHSLSKL 316
            +T  LHHY + +   S+Q N  ++   + +Y      +LS +
Sbjct: 2490 KTYGLHHYCILLLENSLQNNPGLSEDELTVYHKSCLDALSDI 2531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,683,551
Number of Sequences: 5004
Number of extensions: 30686
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)