Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0070
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    28   0.58 
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   2.3  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   4.1  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      25   7.2  

>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 448 W*KLSRHFQLGIFNTMKI*FYGFILAFCYCLYY 350
           W  L   F   +F   +  FYG++L  C+C  Y
Sbjct: 258 WAMLEALFLSHVFPRYRFCFYGYVLWLCWCTMY 290


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 8/35 (22%), Positives = 25/35 (71%)
 Frame = -3

Query: 146  IFLIRIMFFLIVSLMLVNCLTLETSASIFFNILFG 42
            I ++ ++FF++V  +L++ + + +  +++F ++FG
Sbjct: 2180 IIILLLIFFIVVWAVLLSVIKILSLNNVWFPVIFG 2214


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -2

Query: 174 RLDFKFFSEDILNSNYVFFNCFTNASELFDIRN 76
           +L F+F+ + I++ N    +CFTN S L+D+ N
Sbjct: 496 QLLFQFY-QSIMDLNN---DCFTNTSHLYDVLN 524


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 113 VSLMLVNCLTLETSASIFFNILFGTHIF 30
           +S  +V    LE S ++FF ILF  H F
Sbjct: 211 LSASVVLASRLEKSINVFFFILFAVHWF 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,615,170
Number of Sequences: 5004
Number of extensions: 27377
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)