Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0068
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.5  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    27   2.0  
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    27   2.6  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 544  AGAPPAPVVQIESPTAPCPGGHHATP 621
            +GAPP P   + +P  P P G    P
Sbjct: 1137 SGAPPVPKPSVAAPPVPAPSGAPPVP 1162



 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 544  AGAPPAPVVQIESPTAPCPGGHHATP 621
            +GAPP P   + +P  P P G    P
Sbjct: 1118 SGAPPVPKPSVAAPPVPVPSGAPPVP 1143



 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 544  AGAPPAPVVQIESPTAPCPGGHHATPTFP 630
            AG PP PV   ++P  P P     + + P
Sbjct: 1224 AGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = +2

Query: 65  IHAYFYHKCKVIEYTFRISNDS*FIHVAPVNNPCTLTQRIIQSKCSRVKIKEFFYFNSYL 244
           I  YF+ +  +    + IS+   F+H + + +    T+ I  +K S +KI  + + + Y+
Sbjct: 475 IPKYFFSELNIASICYEISSGLAFLHNSGIAHHNLTTECIYLTKSSCLKIGNYAFSSPYI 534


>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 137 IHVAPVNNPCTLTQRIIQSKCSRVKIKEFFY 229
           + VAP  +PC LT+  +  K +R K+ +  +
Sbjct: 94  LRVAPEEHPCLLTEAPLNPKSNREKMTQIIF 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,266
Number of Sequences: 5004
Number of extensions: 55826
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)