Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0064
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    27   4.3  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   5.7  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    26   5.7  

>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +3

Query: 42  KHKRFIEHHNYSTPNNLGYRQV*ATPNSLISEYTIAE*LL 161
           KH++F E H+ S  +N  YR+  A+  +++ E++  E LL
Sbjct: 211 KHEQFAEQHSISLNSNNRYRKADASA-AVVDEHSDEEALL 249


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 228 HVISITIVDQNILKLNTIKNRYSDNVFY 311
           HV    I+ QN L L T++NRY D   Y
Sbjct: 681 HVPLQAIIFQNKLLLRTLENRYEDYESY 708


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 352 KIDFTIFCNSIWRLIS*WY 408
           +IDFTI    +W L+  WY
Sbjct: 122 EIDFTIISRDVWDLLVRWY 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,176,586
Number of Sequences: 5004
Number of extensions: 65065
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)