SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0063
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...   169   2e-43
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    43   3e-05
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    31   0.11 
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    30   0.33 
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    29   0.76 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.3  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    26   4.1  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    26   5.4  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    26   5.4  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   5.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   7.1  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   9.4  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   9.4  
SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar...    25   9.4  

>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score =  169 bits (412), Expect = 2e-43
 Identities = 87/181 (48%), Positives = 112/181 (61%), Gaps = 5/181 (2%)
 Frame = +3

Query: 120 IRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAK 299
           + +A     K TLP LPY YNALEP +S  IM LHH KHH TY+NNLN A+EKLA     
Sbjct: 16  VSIARGVHTKATLPPLPYAYNALEPALSETIMKLHHDKHHQTYVNNLNAAQEKLADPNL- 74

Query: 300 GDIDTIINLAPALKFNGGGHINHSIFWHNLSP---NGGKP--SDVLTKAGEKDFGSWDNI 464
            D++  + L  A+KFNGGGHINHS+FW  L+P    GGKP  S  L KA    +GS ++ 
Sbjct: 75  -DLEGEVALQAAIKFNGGGHINHSLFWKILAPQKEGGGKPVTSGSLHKAITSKWGSLEDF 133

Query: 465 KNQLSTASVAVQGSGWGWLGYNKQMKKLLIATCQNQDPLQATTGLVPLFGINVWEHAYYL 644
           + +++ A  ++QGSGW WL  +K    L I T  NQD +  +    P+ GI+ WEHAYY 
Sbjct: 134 QKEMNAALASIQGSGWAWLIVDKD-GSLRITTTANQDTIVKSK---PIIGIDAWEHAYYP 189

Query: 645 Q 647
           Q
Sbjct: 190 Q 190


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 15/108 (13%)
 Frame = +3

Query: 360 INHSIFWHNLSPNGGKPSD-----VLTKAG-EKDFGSWDNIKNQLSTASVAVQGSGWGWL 521
           +NH  F+  L       +D     +  K G +  FGS+  +K+Q+     +V G GW WL
Sbjct: 76  VNHDFFFSGLISPERPSADADLGAINLKPGIDASFGSFGELKSQMVDVGNSVFGDGWLWL 135

Query: 522 GYNKQMKKLLIATCQNQD---------PLQATTGLVPLFGINVWEHAY 638
            Y+ +     +    N           P   T  +VPL  +N+W++AY
Sbjct: 136 VYSPEKSLFSLLCTYNASNAFLWGTGFPKFRTNAIVPLLCVNLWQYAY 183


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
 Frame = +3

Query: 141 RQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTII 320
           RQKHT P  P   +A          S HH  HH+   N L    EK      K + ++  
Sbjct: 97  RQKHTAPATPIPVSA----------SRHHKPHHSGLKNLL----EKAMHPGHKSNANSPT 142

Query: 321 NLAPALKFNG--GGHINH-SIFWHNLSPNGGKPSDV 419
           + +P+  F      HI H +   H  SP  GK SD+
Sbjct: 143 SESPSKGFGSFINNHILHKNTSSHPSSPVNGKSSDI 178


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 231 KHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPAL-KFNGGGHINHSIFWHNLSPNGG 404
           K+HA           K+ QA  K   D  +N+A  + ++N     N+ +FW  +S +GG
Sbjct: 157 KYHAIISIGYMFRYLKIVQAAKKYVADNNLNIACTIARYNSAYEHNNKLFWWYMSKSGG 215


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 13/156 (8%)
 Frame = +3

Query: 150 HTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLN--VAEEKLAQAQAKGDIDTIIN 323
           HT+P L  + N L P+ S E + +   +H    +  LN  V   +L  +     I     
Sbjct: 39  HTVPNLS-QRNLL-PLFSPEALDIAWDQHQRQVVKELNDRVKGTELEDSSVFNIIFQTAA 96

Query: 324 L---APALKFNGGGHINHSIFWHNLSPNGG--------KPSDVLTKAGEKDFGSWDNIKN 470
           L   A   +F    + NH  F   +             + +  + KA  ++FGS +N+ +
Sbjct: 97  LPEHAATFQFASQAYNNHFFFQSLIGKRAADAKKNSKYEANAAINKAVNENFGSKENLLS 156

Query: 471 QLSTASVAVQGSGWGWLGYNKQMKKLLIATCQNQDP 578
           ++   +    G+ W W+  +   +  L+ T Q   P
Sbjct: 157 KIHELASNSFGACWLWIVIDDYNRLNLLRTFQAGSP 192


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 564  QNQDPLQATTGLVPLFGINVW 626
            ++ DPL+AT+  +PLF +  W
Sbjct: 2142 KHTDPLRATSDFIPLFSMQRW 2162


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +1

Query: 583 RPPLDWSRSSESMYGSTR 636
           +PPL WS SS +++G+++
Sbjct: 101 KPPLTWSPSSANLFGTSK 118


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 329 CKVDNGVDITFSLCLCEFLFSNV 261
           C VD+  +I+ SLC  EF+ S V
Sbjct: 452 CLVDSFENISHSLCTTEFILSRV 474


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 647 LKIVRVLPYIDSEERDQSSGGLQRIL 570
           +K +  +P +D+EER +   GLQ I+
Sbjct: 418 IKNIAEMPTVDAEERSRIFAGLQHII 443


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 552 LAISSFVCCSQANPSLSPVLPQKLSTVDSLCYPRIQSL 439
           +A  SFV  S  N  + P++ Q+  +  + C+ R QSL
Sbjct: 498 IAKGSFVIQSHINGRVIPLIKQRFESFATECFIRPQSL 535


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 251  DISRVMFAVMKTHDFTANDRLQCIVLVRK 165
            D   V+F+  KT    ANDRLQCI+  ++
Sbjct: 3138 DQQNVLFSKTKT----ANDRLQCIIQTKQ 3162


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -1

Query: 585  PAEDPGSGT*LLAISSFVCCSQANPSLSPVLPQKLSTVDSLCYPRIQSL 439
            PA  P   +  LA SS V   +++ S+ P+ P K +  D L  PR++ L
Sbjct: 975  PALSPAPSS--LARSS-VSSQRSSTSIIPIKPNKPTKPDHLVAPRVKPL 1020


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 502  PCTATEAVDS*FFMLSQDPKSFSPALVRTSEGLPPFGD 389
            P   +  VDS  F+ S D  +FSP +   SEG   FGD
Sbjct: 1485 PYERSPMVDS-GFVGSPDAAAFSPLVQGGSEGREGFGD 1521


>SPAC30C2.05 |erv14||cornichon family protein
           Erv14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 389 QVVPKDRVVDVTTTIEFQGWCKVDNGVDITFSLCL 285
           QV+ K  ++D T      G  K DN + +TF L +
Sbjct: 91  QVIHKTHILDATEIFRQLGRHKRDNFIKVTFYLIM 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,099
Number of Sequences: 5004
Number of extensions: 55916
Number of successful extensions: 157
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -