Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0061
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    29   0.58 
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    25   9.5  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    25   9.5  

>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +1

Query: 301 CAH-CTESRRSPYSFGGMFRTSGYESECGRCFTCSRKI 411
           CAH CT  R     +  M     Y  EC RC  C ++I
Sbjct: 74  CAHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQI 111


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 50  ITFCFKKMVTIIKNQLLKHLSRFTKNLSPE 139
           I FC +  +TIIKN++ K + +   + S E
Sbjct: 371 IVFCSEIQLTIIKNEIRKKIYKCLASASEE 400


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -1

Query: 514 P*NLNTTGERITVEVYLY 461
           P  LNT GER T EVY Y
Sbjct: 10  PSRLNTLGERPTNEVYEY 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,916
Number of Sequences: 5004
Number of extensions: 51573
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)