Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0060
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    29   0.75 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   2.3  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    26   5.3  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    26   7.0  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   9.2  
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    25   9.2  

>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
 Frame = +2

Query: 512 PSARPTEITNEDLVTFVATVPPAVGCVTASWRHATAASGSRTRWAAPSRPASRGGPVPNS 691
           PS  P   +N       A   PA    +A+   A AAS +R   AAP     +GG  P  
Sbjct: 59  PSGPPPSYSNS-----AAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPPQGG-YPQQ 112

Query: 692 PY---NESYYNSLAVLLQRPDWENPAVT 766
           PY   N+  Y        +P +  PA +
Sbjct: 113 PYYYPNQPNYYPAQPAYAQPVYAQPATS 140


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = +2

Query: 572  PPAVGCVTASWRHATAASGSRTRWAAPSRPASRGGPV-PNSPYNESYYNSLAVLLQRPDW 748
            P AV   T +  H     G       P +PA+R  P+ P +    S Y    V +  P  
Sbjct: 986  PIAVASSTVNPAHTYKPHGGSQIVPPPKQPANRVVPLPPTASQRASAYEPPTVSVPSPSA 1045

Query: 749  ENPAVT-QLNP 778
             +P+VT QL P
Sbjct: 1046 LSPSVTPQLPP 1056


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 534 ISVGRAEGHLLDGLIYYQSFCFFFHHPQTVAAHVKDCSNW 415
           I V    G +L G ++Y    +F HH +   A++ D   W
Sbjct: 267 IGVAGFSGAIL-GYVFYDLTHYFLHHRRMPNAYLTDLKTW 305


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 529 RNHERGFSYICRDGTTRRW-MCHGFLASRDSGERLSHAVG 645
           R ++ G   +  D    +W M +  +ASRD  + +SH VG
Sbjct: 488 RIYDGGEVCVAEDYDRSKWPMLYSLIASRDDYDYVSHLVG 527


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 386 SASSQTCIP-RDSKTSTQPRYLTGKVQVPARTAASSACHWCGR 261
           ++SS++CIP +D  +  +  ++      PA ++ +SA HW  R
Sbjct: 152 ASSSRSCIPQQDPNSEEEDTFMQRPFLYPA-SSYNSALHWSHR 193


>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 556 ICR--DGTTRRWMCHGFLASRDSGERLSHAVGCA-FTACLE 669
           IC+  D    +++CHG   S  S + L+ A+  A    C+E
Sbjct: 379 ICKQLDDIHEKFLCHGIALSLISADNLASAIASAHLVICME 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,975
Number of Sequences: 5004
Number of extensions: 48127
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)