Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0052
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    27   1.6  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.8  
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    25   6.5  
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...    25   8.6  

>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +1

Query: 535 KALCILKCLL-FKTDDLCLKKNEK 603
           +A CI+K L  F TDDL +K NEK
Sbjct: 612 EADCIIKNLQNFSTDDLIIKSNEK 635


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 517  FIYWCHKALCILKCLLFKTDDLCLKK 594
            F +WC   L I  CLL +   +CL+K
Sbjct: 1281 FGFWCVTVLTIALCLLPRFSYICLQK 1306


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 325 LDTGVALCRHANAVRDSAKLILDAP 399
           ++TG   CRHA+AV+ +A+     P
Sbjct: 82  VNTGSRTCRHADAVKAAAEAATTTP 106


>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +1

Query: 256 DLAEWLTVLYPELRITADNFLDRLDTGVALCRHANAVR 369
           ++ +W+   YP++ + A N + R  T   +   A+ +R
Sbjct: 291 EMIKWIKKTYPKIDVIAGNVVTREQTASLIAAGADGLR 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,118
Number of Sequences: 5004
Number of extensions: 44849
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)