Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0044
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    30   0.29 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    29   0.88 
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    28   1.2  
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    27   2.0  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    27   2.0  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    27   3.5  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    26   4.7  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    26   4.7  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   8.2  
SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...    25   8.2  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    25   8.2  

>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 26/113 (23%), Positives = 47/113 (41%)
 Frame = +1

Query: 256 SSGGLRQFQTNQRWILLNRSYQQMLKNGTLQITLLKRYPLTTLNLPHIDHLAPLYKVDFV 435
           S   L+  +T +R    N +Y     +  L  +L     L   N P  +++ P Y + ++
Sbjct: 241 SEKALKGRRTTKRNDKENYNYPDFSNDNELLFSLAT---LIVENNPKKENIIPKYYLRYL 297

Query: 436 KLKIKIHTNLDDMSYSLEEAENMDLRENIANLITVMCEITFDPGKFDTLCGPL 594
           +   +   N + +     E E +  + +IANLI    E+T    +    C PL
Sbjct: 298 QRLSRTEINKEIIEIEKLELEVVQFQMSIANLINTQVEVTNTIEELGLRCRPL 350


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 21   STYLLLNYYCIDFFVYVSILANEIHAYENKYIYQSRLWNCIKA 149
            + YL   + CIDFFV V++  N ++A    +   SR +   KA
Sbjct: 1009 NAYLRSTWNCIDFFVLVTLWIN-LYAVLTSHALLSRAFRAFKA 1050


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -3

Query: 278 NCLRPPELACLVVHLPPPASSFWSTNITVIHFNN*STAAVLQCSFDTIP*TTLID 114
           N L P         +   +S+F S++ T I   N  T + L CSFD +  +  ID
Sbjct: 571 NTLPPTSQGATSTTVSSASSNFLSSSCTPIDDTNSVTGSTLSCSFDEMKLSDKID 625


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +3

Query: 102 ENKYIYQSRLWNCIK 146
           ENK++++S  WNC++
Sbjct: 14  ENKFVFRSSSWNCVR 28


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/70 (21%), Positives = 35/70 (50%)
 Frame = +1

Query: 283 TNQRWILLNRSYQQMLKNGTLQITLLKRYPLTTLNLPHIDHLAPLYKVDFVKLKIKIHTN 462
           T++   L+++ Y  +L N    +  L     TT++L  +D    + + +F +  + +   
Sbjct: 441 TSEHKDLVDKVYTNVLNNHCKNLEKLIELVETTIDLEALDSHQYIIRAEFDEELLDLRQR 500

Query: 463 LDDMSYSLEE 492
           LD++ +S+ E
Sbjct: 501 LDELQHSIFE 510


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 23/68 (33%), Positives = 33/68 (48%)
 Frame = +3

Query: 15  INSTYLLLNYYCIDFFVYVSILANEIHAYENKYIYQSRLWNCIKAAL*NCCRGLIVKMNN 194
           I+S   L+N   I  +++     +EI   ENK+I    L N I++ L   C G+I K   
Sbjct: 397 ISSILQLMNGLSISSYMFAITKMDEIEWDENKFI---NLVNSIQSFLKESC-GIIEKSKF 452

Query: 195 GDISAPKG 218
             IS  KG
Sbjct: 453 IPISGLKG 460


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
 Frame = +3

Query: 72  SILANEIHAYENKYIYQSRLWNCIKAAL*NCCRGLIVKMNNGDISAPKGRGRGWQMNNQA 251
           +I A+E   YEN  +  SRL+          CR +   +N G   A  G  R    +N  
Sbjct: 279 TIDAHESSLYEN--VNDSRLYEV------PACRNMA--LNTGYSDADPGYLRTSFRSNSH 328

Query: 252 RELRRPKAVSDEPKVDTSKSKLSADAK--EWYPANYTSQALPAYNTEPAPYRPS 407
             L  P + ++E  V  +   +S  +     Y ++    ++P Y  EP P RPS
Sbjct: 329 NSL--PYSANEEEDVLQADFLVSQQSSMVSSYVSSRDPHSMPYYRREPIPLRPS 380


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 465 QICMDFDLELDEVYLVQ 415
           QIC+D+D+ L  V++VQ
Sbjct: 176 QICIDYDIPLHNVHIVQ 192


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 397  IDHLAPLYKVDFVKLKIKIHTNLDDMSYSLEEAE 498
            ID  + LY  DF+ +  K+H  +   SYSL + E
Sbjct: 1478 IDLNSSLYSDDFIPVNGKLHNVVKLFSYSLCQVE 1511


>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 466 DDMSYSLEEAENMDLRENIANLITVMCE 549
           DD S+   + E+  +RE   + I V+CE
Sbjct: 7   DDFSFEKRKTESQRIREKYPDRIPVICE 34


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +1

Query: 445 IKIHTNLDDMSYSLE--EAENMDLRENIANLITVMCEITFDPGKFDTLCGPLVDS 603
           I I   LD +S  LE    EN D+   +  L+  + +   DP   ++L   L+DS
Sbjct: 138 IPIFLKLDCVSTFLELMNHENADITITVLELLIELTDEDVDPDALNSLFTSLIDS 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,056,275
Number of Sequences: 5004
Number of extensions: 65649
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)