Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0043
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    29   0.96 
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   2.9  
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    27   3.9  
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    25   9.0  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    25   9.0  

>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +1

Query: 172 VAVTPSSYTLRTVGTKIFHLSK-YELILLNNYVLRGGRNENTHTSGI*YV*NGDTASDLP 348
           + V PS  T+      +F   K YEL +  N +LRG       +S +    NG   S  P
Sbjct: 35  IRVFPSFQTILDSSNDLFWKKKNYELRIRRNRLLRGSYAAGVSSSAMNGFVNGTQISSTP 94

Query: 349 QYNTTYSES 375
                YS+S
Sbjct: 95  AEREYYSKS 103


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +1

Query: 124 LRTFSLASQHWYVTCSVAVTPSSYTLRTVGTKIFHLSKYELILLNNYVLRGGRNENTH 297
           L  F L+S+HWY    +  TPS  +  T+       S   L+L+     +G  + N +
Sbjct: 321 LYAFRLSSKHWYKLSDLPFTPSPRSSHTLS-----CSGLTLVLIGGKQGKGASDSNVY 373


>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 266 YCEEVETKTHIQAEYDTCKMATQRATSPNII 358
           Y E VE   H Q  YD C    ++A S N++
Sbjct: 64  YYEGVELLLHEQDFYDLCYQYLRKAASQNVV 94


>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 362 VVLYWGRSLAVSPFYTYHIPLVCVFSFRPP--RNT*LLSSINSYLD 231
           + LYWG +    P   Y +P++ +  F       T LL+ ++++LD
Sbjct: 34  ISLYWGSAPTGRPHCGYFVPMMKLADFLKAGVHVTVLLADVHAFLD 79


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 287 SFRPPRNT*LLSSINSYLD 231
           SF+PP N+ + ++IN Y+D
Sbjct: 32  SFQPPMNSIVANTINEYVD 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,689
Number of Sequences: 5004
Number of extensions: 53200
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)