Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0041
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    36   0.006
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    29   0.89 
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   3.6  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    27   3.6  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   4.7  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    25   8.3  

>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +1

Query: 241 RIYERTQLTKAKTIYKDLYTNSE---FWMKVLVTCSRYYFCVVIDVGQIYQEQNFN*KKS 411
           ++Y RT  + A+   K ++   E    W + L    R YF  + +  QIY+E +F  ++ 
Sbjct: 388 KVYSRTNTSNARNREKAIWQIHEKLLCWERALPIELRQYFIALTENAQIYEELDFEKQRL 447

Query: 412 FTIK*IEVFFKICGVRFF 465
           F+   IEV+   C    F
Sbjct: 448 FSAC-IEVYLSYCNTLIF 464


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 23/72 (31%), Positives = 37/72 (51%)
 Frame = -3

Query: 332  VTKTFIQNSEFVYKSL*IVFAFVSWVLSYILKMNTKTVFVMLSMQFHLVRPERNIMSTRS 153
            + KTF+Q+ E   K+L   F  +S V   + +   + V     ++ H   PE+ +MSTR+
Sbjct: 1693 IRKTFLQHMEEKKKALENPFILLSEVSEILPETPIQEV-----LRQHNADPEQLLMSTRT 1747

Query: 152  PQIGQLRVSFSI 117
            P +     SFSI
Sbjct: 1748 PSVSDR--SFSI 1757


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 208 YQCNFISYDQKETLCPRGHHKLANCECHSQLTSP 107
           YQ   +  + K+++ P    KL NC C  QLT P
Sbjct: 113 YQDAILKSELKDSILP----KLVNCACSVQLTEP 142


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 587 LKYRLQRLPHLSNRNALLLYGRNKRGGGTYPRGLSRG-STTSKIKC 721
           +KY    L +L N N+ + YG       T P  LS+G  T   I+C
Sbjct: 347 VKYFDNSLENLGNYNSFIWYGPRWAQAATAPSRLSKGFITEGGIRC 392


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 298  TNSEFWMKVLVTCSRYYFC-VVIDVGQIYQEQ 390
            TNS+     L++C +Y F  VV+ +G  Y+E+
Sbjct: 1179 TNSDVTALFLISCFQYIFIGVVLSIGPPYREK 1210


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 471 KKKKPNPTDFKENLNSFDRK 412
           KKKK +  DFK+NL S   K
Sbjct: 91  KKKKKDNDDFKQNLKSSSNK 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,637
Number of Sequences: 5004
Number of extensions: 63282
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)