Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0011
         (939 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    29   1.2  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    28   1.7  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    28   2.2  
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    27   2.9  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   5.0  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    27   5.0  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   6.7  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    26   6.7  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   8.8  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   8.8  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 16   STYLLLNYYCIDFFVYVSILANEIHAYENKYIYQSRLWNCIKA 144
            + YL   + CIDFFV V++  N ++A    +   SR +   KA
Sbjct: 1009 NAYLRSTWNCIDFFVLVTLWIN-LYAVLTSHALLSRAFRAFKA 1050


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 273 NCLRPPELACLVVHLPPPASSFWSTNITVIHFNN*STAAVLQCSFDTIP*TTLID 109
           N L P         +   +S+F S++ T I   N  T + L CSFD +  +  ID
Sbjct: 571 NTLPPTSQGATSTTVSSASSNFLSSSCTPIDDTNSVTGSTLSCSFDEMKLSDKID 625


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 730 PEESVFRECLLERCSVEENKIISGLETSEENMR 828
           P ES F E +L  C+V + K++S L T  ++ R
Sbjct: 232 PSESEFSERMLAFCAVHQRKLLSMLGTMLQSSR 264


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +1

Query: 97  ENKYIYQSRLWNCIK 141
           ENK++++S  WNC++
Sbjct: 14  ENKFVFRSSSWNCVR 28


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 451  YNLDDMSYSLEEAENMDLRENI 516
            Y++ D SYS+ E  + ++REN+
Sbjct: 1096 YDIHDQSYSVHELHSENMRENV 1117


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 23/68 (33%), Positives = 33/68 (48%)
 Frame = +1

Query: 10  INSTYLLLNYYCIDFFVYVSILANEIHAYENKYIYQSRLWNCIKAAL*NCCRGLIVKMNN 189
           I+S   L+N   I  +++     +EI   ENK+I    L N I++ L   C G+I K   
Sbjct: 397 ISSILQLMNGLSISSYMFAITKMDEIEWDENKFI---NLVNSIQSFLKESC-GIIEKSKF 452

Query: 190 GDISAPKG 213
             IS  KG
Sbjct: 453 IPISGLKG 460


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
 Frame = +1

Query: 457 LDDMSYSLE--EAENMDLRENIANLITVMCEITFDPGKFDTLCGPLVDSFASTLNDESYT 630
           LD +S  LE    EN D+   +  L+  + +   DP   ++L   L+DS    L   +  
Sbjct: 144 LDCVSTFLELMNHENADITITVLELLIELTDEDVDPDALNSLFTSLIDSGLLPLLSNTIK 203

Query: 631 RPLVDAIVNQSIGEANFRYNGARLCSMYDSVAQ--PEESVFRECLLERCSVEENKIISGL 804
           R   ++      G          L S+ +S+     E +   E LL R SV+E  I + L
Sbjct: 204 R-FDESNEEDRHGVYCVLSLMENLLSVDNSICSIIVENTTLVEWLLSRSSVDETSISTNL 262

Query: 805 ETSEE 819
           + + E
Sbjct: 263 QYAVE 267


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
 Frame = +1

Query: 67  SILANEIHAYENKYIYQSRLWNCIKAAL*NCCRGLIVKMNNGDISAPKGRGRGWQMNNQA 246
           +I A+E   YEN  +  SRL+          CR +   +N G   A  G  R    +N  
Sbjct: 279 TIDAHESSLYEN--VNDSRLYEV------PACRNMA--LNTGYSDADPGYLRTSFRSNSH 328

Query: 247 RELRRPKAVSDEPKVDTSKSKLSADAK--EWYPANYTSQALPAYNTEPAPYRPS 402
             L  P + ++E  V  +   +S  +     Y ++    ++P Y  EP P RPS
Sbjct: 329 NSL--PYSANEEEDVLQADFLVSQQSSMVSSYVSSRDPHSMPYYRREPIPLRPS 380


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 325 KEWYPANYTSQALPAYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLDDMS 471
           K  +PA+Y+S A    N +   +   + S+ G  ++ + + P NL   S
Sbjct: 422 KSIFPASYSSSAEDGQNMQAPAHAYMQSSIYGVNQEQKSEYPSNLSMQS 470


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 18/83 (21%), Positives = 32/83 (38%)
 Frame = +1

Query: 541 EITFDPGKFDTLCGPLVDSFASTLNDESYTRPLVDAIVNQSIGEANFRYNGARLCSMYDS 720
           E+ F P        P++   A + +   Y RPL   I+ +   + +  Y+   L  + D 
Sbjct: 388 EVEFHPLSICKKLQPIIKRLAESNDTAQYIRPLQQVILTRLFQQLSQVYDSISLKYVMDL 447

Query: 721 VAQPEESVFRECLLERCSVEENK 789
               E   F    +E+  +  NK
Sbjct: 448 ATFEEPYDFNPGQIEKFIMNGNK 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,063,139
Number of Sequences: 5004
Number of extensions: 91033
Number of successful extensions: 300
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)