Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0024
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz...    27   1.0  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   7.3  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   7.3  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    24   9.6  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    24   9.6  

>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
           Mug22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +1

Query: 283 FQFQRSNRRYTIQLKLRSHVSRWVTALCWGKCGLL*PLKTKWPVIEGYHSPVKK 444
           FQFQ    R  ++L++ S V+ W+         L    KT + ++E  H   +K
Sbjct: 147 FQFQLGYHRKQMELQMLSFVAEWLVLTQHYTDALNDSAKTLYDIMESSHKAAQK 200


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +1

Query: 58  TRSWICKRGHHIPKDKAADVLIPRYSIKSVQNPTDR*GCSSEYIPDLDLNY 210
           T  W+CKR H I    A    IP    +    PT R     + I   D++Y
Sbjct: 180 THLWVCKRAHMI---NAWGYAIPEKPTEKSYRPTHRAAFRKDAIA-FDMSY 226


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 244 TPLPLYLARSSNTFQFQRSNRRYTIQLKLRSHVSRWVT 357
           T + LY    SNT   Q   ++Y I+ +   +V RW+T
Sbjct: 309 TSILLYGVFLSNTVVTQALIKKYGIEDEANRYVPRWLT 346


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 94  PKDKAADVLIPRY-SIKSVQNPTDR*GCSSEYIPDLDLNYM 213
           PK KAA   + +Y  I +V+ P D       Y+ DLD N +
Sbjct: 31  PKGKAAAEEMSKYHDISAVKFPVDYEKSIGNYLVDLDGNVL 71


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 31  NYYFYCYTLTRSWICKRGHHIPKDKAADVLI 123
           N++ Y  +  +SW  +R HHI  +   D +I
Sbjct: 111 NWWLYRKSPLKSWWIERRHHIRHNLKCDKVI 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,279
Number of Sequences: 5004
Number of extensions: 41340
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)