Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0022
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    28   1.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.9  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    27   3.4  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   5.9  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    26   5.9  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    26   5.9  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    25   7.8  

>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 283 AMLDALGLILYRPNSTQLQVLRNSGKCKSAA 375
           ++   L +IL  PNS++LQ LR  G C + +
Sbjct: 544 SLFSTLRIILEHPNSSRLQKLRAPGLCPNGS 574


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
 Frame = +1

Query: 4   TANTTTMNVPPQVTGTMNGHSTSHSVDTRKRLTPIPDINTTGNHTPYKVQKALVENTMVP 183
           T+ ++T   PP  + +  G S+S  + T    T    I  TGN T          ++  P
Sbjct: 362 TSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTP 421

Query: 184 -----CINSKPYQYTELLMTLPDLAS 246
                C  S    YT   +T   LA+
Sbjct: 422 LTTTNCTTSTSVPYTSTPVTSTPLAT 447



 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 4   TANTTTMNVPPQVTGTMNGHSTSHSVDTRKRLTPIPDINTTGNHT 138
           T+ ++T   PP  + +  G S+S    T    T    I  TGN T
Sbjct: 308 TSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNST 352


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -2

Query: 179 TIVFSTNAFCTLYGVWLPVVLMSGIGVSLLRVSTE*EVEWPF-IVPVTCGGTFIVVVLAV 3
           T  F T+  C    VW+ + L+  IG++L  V    EVE+   ++ V     FI++ + +
Sbjct: 180 TFTFWTDVNCA---VWISIFLVVVIGINLFGVRVFGEVEFVLALIKVVATVGFIILAIII 236


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 4   TANTTTMNVPPQVTGTMNGHSTSHSVDTRKRLTPIPDIN 120
           T  TT+ NVPP    ++   S S S     +L+PI   N
Sbjct: 378 TVQTTSSNVPPVNRPSLKSKSPSVSNILSNQLSPISSAN 416


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = +1

Query: 13  TTTMNVPPQVTGTMNGHST--SHSVDTRKRLTPIPDINTTGNHTPYKVQKALVENTMVPC 186
           T   ++PP      +  +T     ++T    TPIP  +++G   P  V+   V    V  
Sbjct: 26  TLLQDIPPGSLSENDNSTTFIKPPLETASSSTPIPSSSSSGVLNPSSVRGKPVACLFVAS 85

Query: 187 INSKPYQYTELLMTLPDLASHFFP 258
           +NS   +  EL  T+ D    + P
Sbjct: 86  LNSSRSE-EELTATVKDYFQQWGP 108


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
 Frame = +1

Query: 64  STSHSVDTRKRLTPIPDINTTG-NHTPYKVQKALVENTMVPCINSKPYQYTELLMTLPDL 240
           S+ +SV+++ ++  I      G N      ++++ +      +  +   + + +   PD 
Sbjct: 384 SSKYSVNSKAKMMSISTPMALGMNRGVLSFERSIEKRKNDYEVTGQSLSFVDDVSLTPDS 443

Query: 241 ASHFFPRVSLTTCRAMLDALG--LILYRPNSTQLQVLRNSGKCKSAAAGENG 390
           A  +   V     R   +     L LYRPNS  L+   +  +  S ++GE G
Sbjct: 444 APKYAGHVVAVLNRPSGETCSGTLALYRPNSLALKNQSSHRRNSSTSSGETG 495


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 552 LKLLINTASLKNVSDYVEVLELAADLMLCWCLKMHFATLNF 674
           + +L+NT  +  VS++     +   + LC+ L   F+T+ F
Sbjct: 353 VSILLNTILVYMVSNWKHRFPVFFPIFLCYTLNASFSTIQF 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,219,394
Number of Sequences: 5004
Number of extensions: 35810
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)