Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0087
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    28   0.60 
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    27   1.1  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    25   4.3  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    25   5.6  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   5.6  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    24   9.8  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 27.9 bits (59), Expect = 0.60
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +2

Query: 20  GGRAHSPPGVKWLLEPIDIYN---VNAPPTLRYKL-QGLSIVTTATPPFKPKRITASR 181
           GG  H P  V WLL P DIY+   VN     + +L  G+S+V        P  +T  R
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYSGRKVNVQIETQSELTMGMSVVDWWQVGLLPANVTFLR 291


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +3

Query: 144 PHPSNRNALLLHGRNRQGGGTYPRGLTRGPTTSNYRKY-NYCGFHF-FILLHDVIPS 308
           PHP N   +LL G N Q   + P          N R Y    GF F F+ L +  PS
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSPLNPYIRTIIKNRRDYAERHGFKFEFLDLDEYKPS 153


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 180 GRNRQGGGTYPRGLTRGPTTSNYRK 254
           GR+   G  Y RG   GP  + YRK
Sbjct: 86  GRSSIEGSWYVRGKKLGPAATKYRK 110


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
 Frame = +3

Query: 144 PHPSNRNALLLHGRNRQGGGTYPRGLTRGPTTSNYRKY-NYCGFHFFILLHDVIPS 308
           PHP N   ++L G N Q     P          N R+Y    G+ F  L  D   S
Sbjct: 97  PHPDNSKIVILMGSNFQNDANSPLHPFAQSIIKNRREYAERHGYKFEFLDADAYAS 152


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 29  AHSPPGVKWLLEPIDIYNVNAPPTLR 106
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 195 GGGTYPRGLTRGPTTSNYRKYNYC 266
           G G   RG  R    S + KY+YC
Sbjct: 7   GKGRISRGYARQVNPSLFAKYSYC 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,840,293
Number of Sequences: 5004
Number of extensions: 37114
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)