Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0080
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    34   0.014
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    34   0.019
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    30   0.23 
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    29   0.41 
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    29   0.71 
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    27   2.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.2  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    27   2.9  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   2.9  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    26   5.0  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.6  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    25   8.8  

>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 34.3 bits (75), Expect = 0.014
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 3   VAHCWSEQTHHKRKFCTVCRKRLDELPALHCMICEYYVHAECVDFAAADC 152
           V H + ++  ++   C VC +     P L C  C +  H +CV    A C
Sbjct: 412 VGHQFVQRQFYQIMRCAVCAELFSYSPGLQCENCSFVCHKKCVTKVLASC 461



 Score = 29.5 bits (63), Expect = 0.41
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 284 YRCEWCGTTCHAGCRALILEEC 349
           ++C  CG TCH  C  LI + C
Sbjct: 509 FKCVECGITCHGQCAHLIPDYC 530



 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 281 GYRCEWCGTTCHAGCRALILEEC 349
           G +CE C   CH  C   +L  C
Sbjct: 439 GLQCENCSFVCHKKCVTKVLASC 461


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 33.9 bits (74), Expect = 0.019
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +3

Query: 48  CTVCRKRLDELPALHCMICEYYVHAECVDFAAADCKENATYCAGSEPRHVHH 203
           C +C + L     + C+ C Y  H +C       C   ++  A SE   ++H
Sbjct: 419 CALCGEFLKNAAGMQCIDCHYTCHKKCYPKVVTKCISKSSDSASSEYEKINH 470



 Score = 28.3 bits (60), Expect = 0.94
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 278 TGYRCEWCGTTCHAGCRALILEECNFGM 361
           T  +C  CG T HA C  L+ + C   M
Sbjct: 500 TARKCTECGITAHAQCVHLVPDFCGMSM 527


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 27   THHKRKFCTVCRKRLDELPAL-HCMICEYYVHAECVDFAAADCKENATY 170
            T  K+K C  C  RL E   +  C IC  + HA+C+  +    +++  +
Sbjct: 1089 TIRKKKGCIFCFCRLPESGVMIECEICHEWYHAKCLKMSKKKLRQDEKF 1137


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 42  KFCTVCRKRLDELPALHCMICEYYVHAECVDFAAADCKENATYCAGSEPRHV 197
           K   VC    D+   + C  CE + HA CV+  A +  E   +C   +PR +
Sbjct: 3   KIRCVCPFEDDDGFTIQCESCEVWQHAVCVNIDANNVPEK-YFCEQCQPRPI 53


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 281 GYRCEWCGTTCHAGCRALILEECNFG 358
           G  C+ CG  CHA C  L+   C  G
Sbjct: 425 GCVCKNCGFKCHARCELLVPANCKNG 450


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/43 (25%), Positives = 17/43 (39%)
 Frame = +3

Query: 45  FCTVCRKRLDELPALHCMICEYYVHAECVDFAAADCKENATYC 173
           FC +C         L  + CE+  H +C+D      K +   C
Sbjct: 204 FCIICYADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPLC 246


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +2

Query: 368 PIFLPPSAVSIPRTEVPMEAIIGVHVRPPPSQRDFAARAASEKSS 502
           P+  PPSA S+P    PM       V PPP  +   A  +S  SS
Sbjct: 180 PVKSPPSAPSLPSAVPPMPP----KVPPPPLSQAPVANTSSRPSS 220


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 33  HKRKFCTVCRKRLDELPALHCMICEYYVHAECVD 134
           H+R    +C+K  D    L C  CE + H  CV+
Sbjct: 115 HQRPLYCICQKPDDGSWMLGCDGCEDWFHGTCVN 148


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +3

Query: 18  SEQTHHKRKFCTVCRKRLDELPALHCMICE-YYVHAECVDFAAAD 149
           S  T H+   C  C       P  HC++CE Y + + CV     D
Sbjct: 202 SASTVHRSVQCDNCLAHPIVGPRFHCLVCEDYDLCSSCVSHVHHD 246


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 48  CTVCRKRLDELPALHCMICEYYVHAECV 131
           C VC+K      ++ C  C+ Y H +CV
Sbjct: 262 CKVCKKWCAFDFSVQCADCKKYYHMDCV 289


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 422 PLAPRCAGWILLMEAGKLVEACRSCILPR 336
           P   RCA   L    G++V AC    LPR
Sbjct: 53  PCLHRCAFLDLTKSRGRVVHACSRAALPR 81


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/50 (26%), Positives = 17/50 (34%)
 Frame = +3

Query: 87  LHCMICEYYVHAECVDFAAADCKENATYCAGSEPRHVHHWREGNLPANSK 236
           + C  C  + H  CV FA         YC    P     ++ G     SK
Sbjct: 69  IQCDQCSVWQHGNCVGFADESEVPEVYYCEICHPEFHKVYQRGRGAKQSK 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,611,363
Number of Sequences: 5004
Number of extensions: 52069
Number of successful extensions: 167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)