Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0077
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    26   4.3  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    26   5.6  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    25   9.9  

>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -2

Query: 170 PCPGQISIKGKNLSTANSSKG**NQKQKEFEGSAAAEFLQP 48
           P P  ++ +G NLS+ + + G   Q+ K   G   A    P
Sbjct: 25  PAPHGMNTRGNNLSSMSKNTGQRKQRSKSIHGLPVAPVFYP 65


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 177 YLPLSRTNLNKRKKSVNSKQ 118
           +L L+R+ L+K  +S+NSKQ
Sbjct: 715 FLELTRSQLSKMNESINSKQ 734


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 282 EFRFCGVCSATLGGDYRP 229
           +F FC  C AT  GD  P
Sbjct: 290 DFAFCSFCQATWHGDLSP 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,955,998
Number of Sequences: 5004
Number of extensions: 29400
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)