Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0076
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   5.4  
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ...    25   9.5  

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 293 NKWLLETGFQHVIYPVASTY 352
           N  LLE  + HV+Y +A+TY
Sbjct: 673 NDALLEKQYHHVLYSLANTY 692


>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 392

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +2

Query: 239 NMPTCMRDIDPDLIMLIINKWLLETGFQHVIYPVASTY 352
           ++P  + ++DPD +    +KWL       V+Y  A  +
Sbjct: 200 HIPMNLANVDPDFLFTNAHKWLNSPAACTVLYVSAKNH 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,056,474
Number of Sequences: 5004
Number of extensions: 39645
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)