Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0073
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    28   1.1  
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch...    27   2.6  
SPAC1610.01 ||SPAC17A5.17|conserved fungal protein|Schizosacchar...    27   2.6  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    27   2.6  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   2.6  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    26   3.4  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    26   3.4  
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    25   6.0  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   6.0  

>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 259 KQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQ-DGFL 372
           +Q    K  +KN K+KN   ++KPLL TE   CQ D FL
Sbjct: 149 EQLIQIKVCMKNEKMKNLMEQLKPLLQTE---CQFDKFL 184


>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 257

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 9   VSLLWPRASCSPARLLMVTD 68
           V+ +W R +CSP+RL  +T+
Sbjct: 211 VTQVWERGTCSPSRLSFLTE 230


>SPAC1610.01 ||SPAC17A5.17|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 217

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 241 FVLRYEKQTCDWKDAVKNCKLKNKERKIKPLLYTE 345
           F+L  E+Q   WK   +   L  K+ K KP +Y +
Sbjct: 62  FILFDEEQNSGWKIPYETITLHAKQSKDKPYVYVQ 96


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 428 SFSPLQKRPRSMQVESPQARKP 363
           S SPLQK  +  Q+ESP A  P
Sbjct: 254 SISPLQKVNKQQQIESPTATFP 275


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 534 SRSSQERTHARNRMAELYLGRCQYHKEFSSDP 439
           ++S  E  + R+RM EL+L +C  H    S+P
Sbjct: 94  AKSDAEFLNFRSRMLELFLRQCLLHPCIRSNP 125


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 291 FHSIFPIAGLFLISKNKPAGQRIACIPEAVHWM 193
           FH   P++         P GQRI C+  A  W+
Sbjct: 534 FHPFDPVSKKITAYVEAPDGQRITCVKGAPLWV 566


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 447 SDPSPTVLFAVTEKTAFNASRVAASEEAILTEWFFSVQERLYFTLL 310
           SD +  VL+ +  K   NASR  +    + TE F    ERL  T++
Sbjct: 456 SDTNEVVLWHIPNKVLINASRKRSVILHLPTETFKVCSERLTSTII 501


>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 367 SHLDRVVLQCTREALFYAPCS 305
           S L++V L   RE LFY  CS
Sbjct: 198 SRLNQVSLSIDREGLFYGQCS 218


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 305 LSLQFFTASFQSQVCFSYRRTNRPGNV 225
           L+  F + S +SQVC +  +T RPG V
Sbjct: 656 LTSTFLSPSAESQVCLAEIKTIRPGLV 682


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,372,801
Number of Sequences: 5004
Number of extensions: 47645
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)