Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0072
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    28   1.1  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    27   3.5  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   6.0  
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    25   8.0  

>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -3

Query: 248  FFICKRHIV-ISVHKFY-PNNK*LVNDCSKCEST 153
            FFI K  ++  + H+F  P+ K LVN C+ C ST
Sbjct: 1213 FFIPKLEMLKFNAHEFSSPSEKTLVNHCNSCNST 1246


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 256 SYLYFIWHRYTFDYYK*VHYKLTYLWGIL 342
           +YL F     +F  +K +   LTY WG+L
Sbjct: 176 AYLRFALRTMSFSNFKELVISLTYFWGLL 204


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 253 NASSYVNVIL*LVFINFTLIINNLLMTV 170
           NAS Y+N I  + F+N+ LI +  L  V
Sbjct: 290 NASKYLNAISDIPFLNYELITSTKLAKV 317


>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 563 FFIKNFKGLDFFLALPGRLGRFFDQDF*AFYP 658
           F +KNF  + FF+ LP    +F+  +  AF P
Sbjct: 25  FDVKNFANIHFFIPLPNTPKKFYSVN--AFSP 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,435
Number of Sequences: 5004
Number of extensions: 47474
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)