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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0067
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   138   8e-34
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    61   1e-10
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    58   1e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    52   5e-08
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    42   8e-05
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    38   0.002
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    30   0.33 
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    28   1.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.0  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    28   1.3  
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p...    27   3.1  
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa...    27   3.1  
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce...    27   3.1  
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy...    27   3.1  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    27   3.1  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    27   3.1  
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc...    27   3.1  
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc...    27   3.1  
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy...    27   3.1  
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos...    27   3.1  
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc...    26   4.0  
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz...    26   4.0  
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo...    26   4.0  
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    26   5.3  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    25   7.1  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   9.3  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  138 bits (333), Expect = 8e-34
 Identities = 72/119 (60%), Positives = 82/119 (68%)
 Frame = -3

Query: 638 PKRLLPNPRFGVWKACGIHEPT*TPS*SATWDIRKDLYANTVLSVVPPCTLESPTVCKRK 459
           P+ L      G+  A GIHE T         DIRKDLY N V+S             +++
Sbjct: 258 PEALFQPSALGLENA-GIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKE 316

Query: 458 SQALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 282
            QALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 317 IQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375



 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 33/66 (50%), Positives = 39/66 (59%)
 Frame = -2

Query: 639 AQKASSKPSFWGMESLRHPRAHINSIMKCDVGHP*GLVRQHRIVGGTTMYPGIADRMQKK 460
           A +A  +PS  G+E+     A  NSIMKCDV     L     + GGTTMYPGIADRMQK+
Sbjct: 257 APEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKE 316

Query: 459 ITGSRP 442
           I    P
Sbjct: 317 IQALAP 322


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 38/116 (32%), Positives = 64/116 (55%)
 Frame = -3

Query: 629 LLPNPRFGVWKACGIHEPT*TPS*SATWDIRKDLYANTVLSVVPPCTLESPTVCKRKSQA 450
           +L NP     +A G+H         +  D+R  LY+N VLS               + +A
Sbjct: 265 VLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRA 324

Query: 449 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 282
           ++    ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++  +++ R+ F
Sbjct: 325 ISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 23/44 (52%), Positives = 34/44 (77%), Gaps = 3/44 (6%)
 Frame = -3

Query: 407 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 285
           ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G    +++ ++C
Sbjct: 389 ERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432



 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 585 PRAHINSIMKCDVGHP*GLVRQHRIVGGTTMYPGIADRMQKKITGSRP 442
           P+   N I +CDV     L+    + GGT++  G + R+Q +++   P
Sbjct: 328 PQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYP 375


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 21/29 (72%), Positives = 24/29 (82%)
 Frame = -3

Query: 395 SVWIGGSILASLSTFQQMWISKQEYDESG 309
           +VW GGSILASL  FQ +W+SKQEYDE G
Sbjct: 390 AVWFGGSILASLDNFQHLWVSKQEYDEVG 418



 Score = 30.7 bits (66), Expect = 0.19
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = -2

Query: 567 SIMKCDVGHP*GLVRQHRIVGGTTMYPGIADRMQKKI----TGSR 445
           SI+ CD      L+    + GGT++ PG+++R+Q ++    TGSR
Sbjct: 331 SILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSR 375


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
 Frame = -3

Query: 431 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 309
           K+KI   P R+++V+IGG++LA  ++    MW+SK E++E G
Sbjct: 337 KVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378



 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 570 NSIMKCDVGHP*GLVRQHRIVGGTTMYPGIADRMQKKI 457
           ++I   DV     L R   + GG++MY G+  R++K+I
Sbjct: 280 DTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEI 317


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -3

Query: 428 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 291
           + +I+   ++ +VW GGS+LA    F     +K +Y+E G SI  R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -1

Query: 331 NRSTTSLAPPLYTGSASKRTARRCLHSPRPAAQFRLVISVNLIVRKI 191
           NRS +SL+   Y+   SK+T+   L+  R + Q +++     I+R++
Sbjct: 241 NRSGSSLSSNFYSSRLSKKTSLASLNKSRASLQHKIMSLSRNIIRRV 287


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/60 (23%), Positives = 25/60 (41%)
 Frame = -3

Query: 476 TVCKRKSQALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 297
           T  KR+  ++ P    I +          W G S  +    F+   ++++EY E GP  +
Sbjct: 652 TRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -1

Query: 397 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLHSPRPAAQFRLVI 218
           TP  +     PPS+PS+R   R  S ++ APP     ++   +      PRP A   +  
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNP 282

Query: 217 SVN 209
           ++N
Sbjct: 283 AIN 285


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -3

Query: 389 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 288
           ++GGSI+A  S  + +   +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522


>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 643 RCPKGFFQTLVLGYGKLAASTSP 575
           RCP+G F+ LV+ YG    ST+P
Sbjct: 523 RCPRGVFEYLVMPYG---ISTAP 542


>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 643 RCPKGFFQTLVLGYGKLAASTSP 575
           RCP+G F+ LV+ YG    ST+P
Sbjct: 523 RCPRGVFEYLVMPYG---ISTAP 542


>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 643 RCPKGFFQTLVLGYGKLAASTSP 575
           RCP+G F+ LV+ YG    ST+P
Sbjct: 523 RCPRGVFEYLVMPYG---ISTAP 542


>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 643 RCPKGFFQTLVLGYGKLAASTSP 575
           RCP+G F+ LV+ YG    ST+P
Sbjct: 523 RCPRGVFEYLVMPYG---ISTAP 542


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 478 GDSRVHGGTTDNTVLAYKSLRMSHV 552
           GDSR H   TD ++L+  S+R S +
Sbjct: 277 GDSRTHSAETDRSLLSAMSVRNSRM 301


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -1

Query: 394 PYGSVDRSS--PPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLHSPRPAAQFRLV 221
           P+ + D SS  P +LP+   GS N + T + P   + +++K   +   + P+P +   L 
Sbjct: 532 PFSATDISSVQPTNLPN---GSTNGTETFIPPVQNSITSNKEAVKPIKNKPKPISFESLS 588

Query: 220 ISVNLIV 200
              NLI+
Sbjct: 589 AVGNLII 595


>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 643 RCPKGFFQTLVLGYGKLAASTSP 575
           RCP+G F+ LV+ YG    ST+P
Sbjct: 523 RCPRGVFEYLVMPYG---ISTAP 542


>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1333

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 643 RCPKGFFQTLVLGYGKLAASTSP 575
           RCP+G F+ LV+ YG    ST+P
Sbjct: 523 RCPRGVFEYLVMPYG---ISTAP 542


>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 643 RCPKGFFQTLVLGYGKLAASTSP 575
           RCP+G F+ LV+ YG    ST+P
Sbjct: 523 RCPRGVFEYLVMPYG---ISTAP 542


>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
           element|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1333

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 643 RCPKGFFQTLVLGYGKLAASTSP 575
           RCP+G F+ LV+ YG    ST+P
Sbjct: 523 RCPRGVFEYLVMPYG---ISTAP 542


>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 643 RCPKGFFQTLVLGYG 599
           RCP+G F+ LV+ YG
Sbjct: 523 RCPRGVFEYLVMPYG 537


>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
           element|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1333

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 643 RCPKGFFQTLVLGYG 599
           RCP+G F+ LV+ YG
Sbjct: 523 RCPRGVFEYLVMPYG 537


>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 643 RCPKGFFQTLVLGYG 599
           RCP+G F+ LV+ YG
Sbjct: 523 RCPRGVFEYLVMPYG 537


>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 375 RSTDPYGVLPLWRSNDLNLHCRWGESL*FSFAYGRRFQGTWWYHRQ 512
           R+    GV+ LWR N  N+  R+  +   +FA+  +F+  + Y ++
Sbjct: 80  RTAAEEGVISLWRGNTANV-LRYFPTQALNFAFKDKFKKMFGYKKE 124


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = -3

Query: 428 IKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 288
           I +I PP   + ++  W G  I   +    ++WI   ++   G  ++  K
Sbjct: 563 ISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDWKMLGSRVLQYK 612


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 330 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 416
           F   HLL   + G+D + + YG L  W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,716
Number of Sequences: 5004
Number of extensions: 57330
Number of successful extensions: 171
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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