Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0065
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    28   0.95 
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    26   3.8  
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    25   5.1  
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    25   5.1  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    25   6.7  

>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 359 YTNLKYNENYLAPRECCLKRHLTLQCQHVKKNIYFNVKM 475
           Y   K   ++L   ECC++ +L L  Q + +  YF VK+
Sbjct: 137 YVKNKTELSFLGNEECCMQTNLPL--QRINEVYYFEVKL 173


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 113 ADMGTNRRDISTYIPHLNFQGPQRVSGH 30
           A  GT++ +IST +P      P++VSGH
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGH 398


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 218 ILIQCYILHLNYAIQNNLSTNTYIIT 295
           +LI    + L YA+QN+L T++ I+T
Sbjct: 11  LLINSAPVILGYALQNSLQTSSVIVT 36


>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 425 SNDVLNNIPVVPSNFHCILSWYKKQIYGNKSSYLAYNAKK*INWL*C 285
           + D LN++  +PSNF       KK +    SS +  NA + I  + C
Sbjct: 54  TKDYLNSLQFLPSNFRPKTHKKKKSVSSYLSSTIQKNANENIPHVQC 100


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 413 KRHLTLQCQHVKKNIYFNVKMSFKLSSV 496
           K ++ LQCQHV  N  F V +   + SV
Sbjct: 106 KTYVILQCQHVVANFKFIVIILHAMCSV 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,919,853
Number of Sequences: 5004
Number of extensions: 35221
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)