Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0064
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    29   0.57 
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    27   2.3  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    26   5.3  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   5.3  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   5.3  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   9.2  

>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 100 LRESHQYYRAVVRMHLVLL 156
           L+ESHQ YR +V +HL LL
Sbjct: 297 LKESHQIYRKMVSLHLELL 315


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
 Frame = +1

Query: 112  HQYYRAVVRMHLVLLFTVAALLG--SCQSAHLNKHIKLL---SDIDNSIENGVKQNLMDL 276
            H   + +   H V+ F    +LG  S  +  L  H +       + + +E GVKQ+ + +
Sbjct: 1182 HWVNKLINPSHSVIFFNTDDILGVESKTNNILENHTEAFLIEQAVSSFLERGVKQSSIGI 1241

Query: 277  INIYRSR 297
            I+IY+S+
Sbjct: 1242 ISIYKSQ 1248


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 401 LFSLRVDVESNELIDSKPDIYCENFLQLFIV 493
           LFSL  D  S E   +KP ++ +NFL++ ++
Sbjct: 155 LFSLLADAISKE---TKPSVWGDNFLRIILI 182


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 369 PAPSVHWFKNDSSVYE 416
           P P++ WF NDSSV +
Sbjct: 653 PFPTLDWFTNDSSVIQ 668


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
 Frame = +1

Query: 187 QSAHLNKHIKLLSDIDN-SIE--------NGVKQNLMDLINIYRSRKAPY 309
           Q AH+N+    +SD+DN S+E        NG   +L+   NI+ +RK  Y
Sbjct: 47  QCAHMNRRPAWISDLDNSSLEVVRHLGEGNGGAVSLVKHRNIFMARKTVY 96


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 377 ISTLVQERLFSLRVDVESNELIDS 448
           ISTL  ++L +  VD+ SN+ IDS
Sbjct: 3   ISTLKVDQLQNEAVDINSNDTIDS 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,520
Number of Sequences: 5004
Number of extensions: 43970
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)