Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0061
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...   168   5e-43
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...   167   1e-42
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...   166   1e-42
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    30   0.18 
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    27   1.3  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    27   1.7  
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    27   1.7  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   5.1  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   6.7  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   6.7  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    25   8.9  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   8.9  

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  168 bits (408), Expect = 5e-43
 Identities = 84/144 (58%), Positives = 98/144 (68%), Gaps = 2/144 (1%)
 Frame = +2

Query: 2   RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
           R+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV  I+ QRLI
Sbjct: 11  RVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLI 70

Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKIMNCFV*SMMLRADSQSTVSPL--RRLSTKLCKVKR 355
           KVDGKVRTD T+P GFMDV+S+EK    F   ++     + TV  +       KLCKVKR
Sbjct: 71  KVDGKVRTDSTFPTGFMDVISVEKTGEHF--RLVYDIKGRFTVHRITAEEAKYKLCKVKR 128

Query: 356 VATGPKNVPYLVTHDGPYHPLPRP 427
           V  G K VP+LVTHDG     P P
Sbjct: 129 VQLGAKGVPFLVTHDGRTIRYPDP 152



 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = +3

Query: 405 RTIRYPDPLIKSQRFHPVDIATTKIMDFIKFES 503
           RTIRYPDPLIK      +++ T KI  FIKF++
Sbjct: 145 RTIRYPDPLIKVNDTIKLNLETNKIESFIKFDT 177


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score =  167 bits (405), Expect = 1e-42
 Identities = 83/144 (57%), Positives = 98/144 (68%), Gaps = 2/144 (1%)
 Frame = +2

Query: 2   RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
           R+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV  I+ QRLI
Sbjct: 11  RVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLI 70

Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKIMNCFV*SMMLRADSQSTVSPL--RRLSTKLCKVKR 355
           KVDGKVRTD T+P GFMDV+S++K    F   ++     + TV  +       KLCKVKR
Sbjct: 71  KVDGKVRTDSTFPTGFMDVISVDKTGEHF--RLVYDIKGRFTVHRITAEEAKYKLCKVKR 128

Query: 356 VATGPKNVPYLVTHDGPYHPLPRP 427
           V  G K VP+LVTHDG     P P
Sbjct: 129 VQLGAKGVPFLVTHDGRTIRYPDP 152



 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = +3

Query: 405 RTIRYPDPLIKSQRFHPVDIATTKIMDFIKFES 503
           RTIRYPDPLIK      +++ T KI  FIKF++
Sbjct: 145 RTIRYPDPLIKVNDTIKLNLETNKIESFIKFDT 177


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  166 bits (404), Expect = 1e-42
 Identities = 83/144 (57%), Positives = 98/144 (68%), Gaps = 2/144 (1%)
 Frame = +2

Query: 2   RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
           R+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV  I+ QRLI
Sbjct: 11  RVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLI 70

Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKIMNCFV*SMMLRADSQSTVSPL--RRLSTKLCKVKR 355
           +VDGKVRTD T+P GFMDV+S+EK    F   ++     + TV  +       KLCKVKR
Sbjct: 71  QVDGKVRTDSTFPTGFMDVISVEKTGEHF--RLVYDIKGRFTVHRITAEEAKYKLCKVKR 128

Query: 356 VATGPKNVPYLVTHDGPYHPLPRP 427
           V  G K VP+LVTHDG     P P
Sbjct: 129 VQLGAKGVPFLVTHDGRTIRYPDP 152



 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = +3

Query: 405 RTIRYPDPLIKSQRFHPVDIATTKIMDFIKFES 503
           RTIRYPDPLIK      +++ T KI  FIKF++
Sbjct: 145 RTIRYPDPLIKVNDTIKLNLETNKIESFIKFDT 177


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
 Frame = -2

Query: 500 LKLDEVHNLRSCNV---YWMKSLTFDK-------WVWVADGTGHHALPSTEHS*VRS 360
           LKL E+  L S N    YW   LT  K       W W +   G H LP+++ + VRS
Sbjct: 393 LKLPEITALSSSNTREKYWDNVLTAHKNDSSARTWNWKSKTLGQHVLPTSDGTSVRS 449


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -3

Query: 226 SSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 71
           SS+   + P+ P++   +E  F  NFQ      S L  IP++   G ++A+++GT
Sbjct: 27  SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = +2

Query: 89  ECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDV-VSIEKIMNC 265
           E + +V+  + R  +AL GN +L       I  D   +   +  +G   V ++I+     
Sbjct: 604 EGVDVVLRWKERTFHALLGNSLLLEHNNVSIPDDFDSKLKLSSSSGLTCVRIAIDGQFVG 663

Query: 266 FV*SM-MLRADSQSTVSPLRRLSTKLC 343
           F+  M  +R DS  TVS L++L  K+C
Sbjct: 664 FLGCMDQVRPDSYQTVSALKQLGKKVC 690


>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 512 KVPRLKLDEVHNLRSCNVYWMKSLT--FDKWVWVADGTGHHALPSTEHS 372
           KV +  LD +  L SC V  + S +    +W  +   +G H+ PS EH+
Sbjct: 348 KVEKTVLDAIPALSSCIVTPLSSDSNQVHRWQHLNGSSGEHSHPSHEHT 396


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 327 SLLRGDTVDCESALNIID*TKQ 262
           S  RGDT D  +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 509 VPRLKLDEVHNLRSCNVYWMKSLTFD-KW 426
           VP   LDE   + SC  +  K++ FD KW
Sbjct: 443 VPSNDLDEQVIINSCKTFTHKAMVFDVKW 471


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 101 LVIFLRNRLKYALTGNEVLKIV 166
           L+ F+  RL++ LT  E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 219 G*VGSVLTFPSTFMRRCFTIFR 154
           G +G  LTFP+  +RR F + R
Sbjct: 237 GIIGQTLTFPADVLRRRFQVNR 258


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -3

Query: 214 SRVSPNFPINLYEALFHNFQDFVSGQSIL 128
           S++ P   I+LY  L+H+   +++ Q ++
Sbjct: 410 SKIDPRVVISLYPDLYHSELSYIAFQGVI 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,905
Number of Sequences: 5004
Number of extensions: 47056
Number of successful extensions: 147
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)