Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0049
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    25   5.7  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   5.7  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   5.7  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    25   7.5  

>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 429 HLLTDIETILRTRDIAQQ*QYFTNP 503
           H++ D+  +   RDI Q  +YF NP
Sbjct: 281 HMMPDLPNVGMERDIFQFQEYFENP 305


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +1

Query: 463 HATSL--NSDNTLQTHNNIINVNCTL 534
           HATSL  +S NTL  H +++ V C L
Sbjct: 589 HATSLLRSSRNTLDLHKDVLIVLCQL 614


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 454 YLEHATSLNSDNTLQTHNNIINVNCTLV 537
           Y+   T L+    LQTH++ +N+ C+L+
Sbjct: 36  YISFLTKLHK--VLQTHSSFVNIPCSLL 61


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 296 KSNKLSGVIISFETEFHFIRNNLRG 222
           K  +    +++ ETEF F+RN L G
Sbjct: 304 KRKEAFDALLNIETEFTFLRNRLYG 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,849,813
Number of Sequences: 5004
Number of extensions: 30951
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)