Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0046
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      28   1.1  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   4.5  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    25   5.9  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   7.8  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   7.8  
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    25   7.8  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    25   7.8  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    25   7.8  

>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = +1

Query: 241 RHEDYLNEELSYCRGLGVPAI----MISIHGRESNNLARILQTYYETSHHPSLIWACVPM 408
           RH D +N+ L +  G+G+P I    +  I+  E  NL +++   +  S+  S+     P+
Sbjct: 99  RHSDNINKFLDFIHGIGLPEIFHFELTDIY--EGKNLPKVIYCIHALSYFLSMQDLAPPL 156

Query: 409 LCS 417
           + S
Sbjct: 157 IKS 159


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = +1

Query: 160  PQDWTSRIVAKLSPYINVDSPSATVRQRHEDYLN-----EELSYCRGLGVPAIMISIHGR 324
            P   ++RI A  SP   ++  + +     + +L+     EEL    GL +  I    +GR
Sbjct: 2039 PSIESARIAANFSPVPIINGGNGSKEHPTQAFLDLYTIREELGSVNGLTITFIGDLKYGR 2098

Query: 325  ESNNLARILQTYYETSH 375
              ++LAR+L  ++   H
Sbjct: 2099 TVHSLARLLAFWHVELH 2115


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 169 WTSRIVAKLSPYINVDSPSATVRQR--HEDYLNEELSYCRGLGVPAI 303
           WT     K   +++VDS   +  +   +E    +++SYC G G+ ++
Sbjct: 192 WTEVYSNKQQRWVHVDSGEESFDEPLIYEQGWGKKMSYCLGFGIDSV 238


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 403 VHMPILETDGGSFHNKFGEFWLNCCSLSRVL 311
           V +PIL   G SFH   G  W      SR+L
Sbjct: 856 VKVPILSLRGVSFHRISGNSWQYKTLASRIL 886


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 169 WTSRIVAKLSPYI 207
           W SR++A+L PYI
Sbjct: 116 WVSRVIARLLPYI 128


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 49  QCSYSFIVSPIIHPRFR 99
           QC +SF+ +P+ HP  +
Sbjct: 158 QCKFSFLFAPMCHPTLK 174


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 415 YIA*VHMPILETDGGSFHNKFGEF 344
           Y+  +H PI  TDG   H  +G F
Sbjct: 90  YLITIHDPICTTDGNLEHALYGSF 113


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +1

Query: 169 WTSRIVAKLSPYINVDSPSATVRQRHEDYLNEELSYCRGLGVPAIMISIHGRESNNLARI 348
           W S I + ++ Y+  +  +A + +    +  +   Y        I++ +H  E NNL+ I
Sbjct: 38  WNSDIRSWMTSYVGFNGETAAISEEQLIWAEKIPDYNE-----EIVVRLHLEEENNLSDI 92

Query: 349 LQ 354
           LQ
Sbjct: 93  LQ 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,224
Number of Sequences: 5004
Number of extensions: 49590
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)