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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0045
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    29   0.43 
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    27   2.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.3  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    26   4.0  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   5.3  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    25   7.1  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   7.1  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    25   9.3  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   9.3  

>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
 Frame = +3

Query: 219 SSPTTPIKPQS*QSLLSLEKYHAMDQFKSWRLTIITTPSLTTANTMTRKSLIKCVVWILS 398
           SS   P  P      ++      ++   S+RL + T+P+L   N   RKSL +    +L 
Sbjct: 147 SSTMIPTTPSKNPEPVAQHTPTVLETPSSYRLQVYTSPNLLRVNAPCRKSLSE----MLR 202

Query: 399 RNKKLEGDAKTAVDNFINEHSKEIDSS--KLVHTDFSE 506
             K +E D  +  +  + E      SS   LV  D S+
Sbjct: 203 ELKDIEDDYGSNEEKILQEFESFSSSSSESLVDRDISQ 240


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
 Frame = +3

Query: 402 NKKLEGDAKTAVDNFINEHSKEIDSSKLV------HTD-FSEEACKFTSSSVITE 545
           NKK EGD K  +D F NE +  I   K++      H D   EE C+  +S    E
Sbjct: 80  NKKFEGDIKNCLDGF-NELNDPIVQEKILRAFEQGHVDEEDEERCRKMASDASEE 133


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 408  KLEGDAKTAVDNFINEHSKEIDSSKLVHTDFSEE 509
            K+EGDAKT  DN + +  K  D  K    D++EE
Sbjct: 1306 KIEGDAKTGDDNEMEDLDKMEDLEK---PDYAEE 1336


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 459 SKEIDSSKLVHTDFSEEACKFTSSSVITEHGKH 557
           +KEI+SSK   TD   E   FT  +  + +  H
Sbjct: 96  AKEIESSKNQETDAKSEQAPFTEDASSSNYAHH 128


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 423  AKTAVDNFINEHSKEIDSSKLVHTDFSEEACKFTSSSVITEHGK 554
            A++ +D FIN H+  +DS   + T F   A     S  + + GK
Sbjct: 3859 AESVLDYFINVHNSNLDSLSKISTLFFMVANNGFCSPDLPQEGK 3902


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 377 LDETFSCHRICSCKRWRSYYSQSP 306
           L E    H+ C+ K W   YS+ P
Sbjct: 439 LVEVILAHKNCTLKEWNQLYSEIP 462


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 44  NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKY 202
           N N    +GI  E+SK+ +   KN + SS + K     V+ +    I+G+K +
Sbjct: 376 NINEINEEGIMTEVSKYASLVNKNYEISSGKLKERQVAVRAR----IEGIKAH 424


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +3

Query: 180 SSTASRSI*KGRPSSPTTPI--KPQS*QSLLSLEKY 281
           +S  SR I    PSSP+TPI   P+  + +LSL++Y
Sbjct: 534 ASLPSRRIVYKPPSSPSTPISMNPRP-KGILSLQQY 568


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
 Frame = +2

Query: 170 NVHIIDGVKKYIEGTAKLTD-----YANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAI 334
           NV  ++   + +E T K  +       NK  +L    K   + RDG V+ L  +      
Sbjct: 403 NVQKLESTNRALESTIKTLEEDVYTMKNKIIELEGILKSANVERDGLVEKLIAEETLRRK 462

Query: 335 AYNCKYDDKKKSHQVCRLDP 394
            +N   + K      CR+ P
Sbjct: 463 LHNTIQELKGNIRVFCRVRP 482



 Score = 25.0 bits (52), Expect = 9.3
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +2

Query: 134 EYKLEGDVVKVKNVHIIDGVKKYIE---GTAKLTDYAN-KAAKLTVT 262
           EY++EG  +++ N  IID +    E   G  KL  Y + KA + T+T
Sbjct: 600 EYRMEGQFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKAGRTTIT 646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,496,806
Number of Sequences: 5004
Number of extensions: 49457
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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