Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0038
(360 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 152 2e-38
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 147 5e-37
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 0.16
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 2.7
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 3.5
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 24 8.2
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 24 8.2
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc... 24 8.2
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 24 8.2
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 152 bits (368), Expect = 2e-38
Identities = 69/106 (65%), Positives = 85/106 (80%)
Frame = +3
Query: 42 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 221
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 222 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIXGRXTPGAFTNQI 359
IENPADV VISSRP+G RAVLKFAAHTGAT I GR TPG FTN I
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYI 115
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 147 bits (356), Expect = 5e-37
Identities = 65/110 (59%), Positives = 86/110 (78%)
Frame = +3
Query: 30 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 209
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 210 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIXGRXTPGAFTNQI 359
R + IENPADV V+S+R +G RAVLKFAAHTGAT I GR TPG FTN I
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYI 114
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 29.5 bits (63), Expect = 0.16
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +3
Query: 165 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIXGRXTPG 341
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 2.7
Identities = 6/25 (24%), Positives = 17/25 (68%)
Frame = -1
Query: 249 RTHQRGSRWLRQHEQPEQVFPRYDA 175
R H++ + W ++HE+P+ + +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.0 bits (52), Expect = 3.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 133 MSTNDVLMVPM*STCVVPGKNLFWLLVL 216
M+ N V + + T PG N FW L++
Sbjct: 920 MTLNPVFQIGLNGTTHSPGNNSFWPLII 947
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 23.8 bits (49), Expect = 8.2
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -2
Query: 218 DSTSSQ--NKFFPGTTQVDHMGTISTSFVDIGLHLEVN 111
DSTS NK+ G V + S S DIGLH E +
Sbjct: 355 DSTSRAIVNKYSLGNN-VSTVNPFSKSLYDIGLHAETD 391
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 23.8 bits (49), Expect = 8.2
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 18 ATMSGGLDVLALNEEDVT 71
+T+SG +DV+ + +ED T
Sbjct: 21 STLSGAIDVIVVEQEDKT 38
>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 615
Score = 23.8 bits (49), Expect = 8.2
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 242 ISGVLDG-YDSTSSQNKFFPGTTQVDHM 162
IS DG Y+ + +PGTT +DH+
Sbjct: 194 ISHTTDGVYEGIAIGGDRYPGTTFIDHL 221
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 23.8 bits (49), Expect = 8.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 48 ALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKL 197
A E+++ +A + +V+F ME V+K A NL+ EKL
Sbjct: 19 AWGSENISNSNSAIPSI-TNDVSFSMEASVWKENALNLDTFNLKDINEKL 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,480,172
Number of Sequences: 5004
Number of extensions: 29371
Number of successful extensions: 56
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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