Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0010
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    28   1.9  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    25   10.0 

>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 10/131 (7%)
 Frame = -1

Query: 644 LPFNII*RYLKIIESFLQLPKWTVSK-------LLISISNKNVRRIDFDVNALIFI--K* 492
           LPFN    +  +I   L +P +  ++       LL +I  +  +R+  D +   F     
Sbjct: 226 LPFNCKKNHYSVITLDLDVPNYETNRFETHCNWLLTNIPIEASKRVPIDTSKAFFQYRPP 285

Query: 491 IYYLDSRRTFILDYLLQT*LFVLNLHHPANISIKEQYA*CEFLNVFDSVKVNSYLYAHG- 315
           I +    +  IL  +L+     +++  P+N  ++E++   EF +++D   V ++L+  G 
Sbjct: 286 IVHRGEDKHRILTLVLRQKSSSISI--PSNALVRERFDLSEFCSIYDLEPVGAHLWRSGW 343

Query: 314 TAPLAANVGKH 282
            +   A + KH
Sbjct: 344 DSDAVALLSKH 354


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 165 GECFKGLIVLILIIFATFIFYQLHYLL 85
           G C++GL+ LIL I  + I Y L +LL
Sbjct: 219 GRCWRGLLWLILFITGSSI-YPLKFLL 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,201
Number of Sequences: 5004
Number of extensions: 49353
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)