Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0110
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.60 
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...    25   7.4  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   9.8  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   9.8  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    25   9.8  

>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +3

Query: 414 KGYFTPFDGYTSAIVGFIVSLPS*VLGGQRLGLVPGIAVSDGNHSPSGGPYARLP 578
           +GYF+P   Y+SA+ G  +S+PS    G+    +  ++   G+H+    PYA  P
Sbjct: 237 RGYFSPMHTYSSAVPG-PISVPS-APYGRASSTIAEVSPMYGSHA---APYASTP 286


>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 85  PKTQRNIVV-IYISLSLCYGYIYCIFFYVYVTVGL 186
           PK  R ++  I+  L   Y +IYC  F+V V + L
Sbjct: 139 PKNFRKVIQQIFRRLFRIYAHIYCSHFHVMVAMEL 173


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -3

Query: 195 TNAKTYSDVDVEKNTIDIAIAKGQRNIDNNYISLC 91
           + +++Y D+  + + +   + + QR IDN    LC
Sbjct: 35  SESESYFDITKKLHALSTVVQRQQREIDNQKRDLC 69


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -2

Query: 271  YTYYNEYCDGTQSF-YTFILIFKV 203
            Y +YNE+ DG   F YT++++F +
Sbjct: 1110 YQFYNEF-DGNYIFDYTYVMLFNL 1132


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 361 DKADEALITTAVTFLRHVLER-TNSHKSCYIYTYYNEYCDGTQS 233
           D+AD A+   A   LR V+E+ T + + C I  Y N+     QS
Sbjct: 127 DEAD-AMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQS 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,352
Number of Sequences: 5004
Number of extensions: 60396
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)