Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0060
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       28   1.3  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    28   1.3  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    28   1.3  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    26   4.1  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    26   5.4  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    26   5.4  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    25   7.2  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    25   7.2  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    25   7.2  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   9.5  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    25   9.5  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    25   9.5  

>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 104

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 514 HIASISHDNCKLFYVIDNVVYYVSLNES 597
           +  S S+D+C  +Y+I N+ +Y  + +S
Sbjct: 4   YFLSKSYDDCSRYYIISNMAFYFPVYDS 31


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 227 RPVELVPSDLRTGEPVSEFVNVFKVL 150
           +PV  +PS L  GE +S F N  K+L
Sbjct: 853 QPVNTIPSSLSLGEQLSAFNNFMKLL 878


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 22/81 (27%), Positives = 39/81 (48%)
 Frame = +2

Query: 251 PPRQHYDEFASATTVASEIQGFRYLRNGTAGVHTKAGVVYYDLDTLQRSKRAVIYGDYNR 430
           P  Q Y ++   T VAS  Q +R +R+    +  +   + Y L  L      ++   Y+R
Sbjct: 746 PGVQPYVDYVVETFVASSTQ-WRLMRD-VGSIRLQYACLQYMLAVLDGLNIDLLL--YSR 801

Query: 431 YVETDDTVLLMNSNLHLFITR 493
            + +     L N+NLH+++TR
Sbjct: 802 ILSSKVRDNLQNNNLHVYLTR 822


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 186 LSRPQITWHELYRSLTLWRQLHLLDSTTTNSRQQPRWPAKSR 311
           L R   +W+ + R  ++W  L+L +  T + R+  R   K R
Sbjct: 34  LERVSRSWNSIVRRSSVWHNLYLSEFGTKHLRRHGRIEKKRR 75


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 201 ITWHELYRSLTLWRQLHLLDSTTTNSRQQPRWPAKSRASDIY 326
           + W E+   L     L LL +T  N+++   W  +++  +IY
Sbjct: 405 VVWEEVIIMLPPHVTLILLSATVPNTKEFASWVGRTKKKNIY 446


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 427 PLCRNRRHSTPDE*QSTFVHNKKTN 501
           P   N+ H+   E +++  HNKKTN
Sbjct: 6   PNLNNKEHNRASEKKNSRTHNKKTN 30


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
 Frame = +2

Query: 374 DLDTLQRSKRAVI------YGDYNRYVETDDTVL 457
           +LDTL   KR +       + DY  Y ETDD V+
Sbjct: 545 ELDTLLNGKRDIDVQDWKRFTDYRSYTETDDIVI 578


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 422 YNRYVETDDTVLLMNSNLHLFITRKLIRS 508
           Y R  +T D  + +N N+HL +   +  S
Sbjct: 724 YERKTQTGDDYIALNHNVHLHLANMIFES 752


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +3

Query: 33  IFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLW 134
           +F++L    L KC+ +  RWK +++    + +L+
Sbjct: 84  VFSYLDQLDLCKCKLMSKRWKRLLEDPGIWKALY 117


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 213  ELYRSLTLWRQLHLLDSTTTNSRQQPRWPAKSRAS 317
            E Y+S  +WR+   +   TTNS    R  A+  AS
Sbjct: 964  EAYKSAGMWRECLSILQQTTNSEDLIRETAEDLAS 998


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 33  IFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYK 140
           IFT +    L  CR VC +++ + D    Y+S++ K
Sbjct: 41  IFTLISTPDLCNCRLVCRKFQQLCD----YNSIYVK 72


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 24  LSXIFTFLPAKQLTKCREVCIRWKNVI-DTLNKYHSLWYKFCG 149
           L  IF+FL  + L   +  C  WK ++ D L+   + ++ F G
Sbjct: 39  LIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRTAFFHHFAG 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,113
Number of Sequences: 5004
Number of extensions: 52254
Number of successful extensions: 166
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)