Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0054
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    50   3e-07
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    27   3.2  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    26   5.5  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    25   7.3  
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    25   7.3  

>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 23/48 (47%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
 Frame = +1

Query: 256 SKEILQLMSFPSEYSFPKT-VTRKQCYRLLGNSVNVKVISELLQILFD 396
           ++E+ +LM FP    + K+ VT K  YRLLGNS+NVKV+S L+ +L +
Sbjct: 279 AREVARLMGFPESLEWSKSNVTEKCMYRLLGNSINVKVVSYLISLLLE 326



 Score = 45.2 bits (102), Expect = 8e-06
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +2

Query: 17  YLVPXXMLXK-ANIFDICYADSNRSCCFTKAYTHYVEGTGSVFTETSYD 160
           Y+V   +L K  + FDI   DS+  CCFT+ YTH V+G GS+   + ++
Sbjct: 211 YMVLESVLNKWGHQFDIVKPDSSSCCCFTRGYTHLVQGAGSILQMSDHE 259


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 587 IIGTRCTSYMLYI 625
           +IGTRC SY+LY+
Sbjct: 145 VIGTRCISYILYL 157


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 416 KLLYSYSSNKICNNSLITLTFTLFPRSL*HCFLVTVLGKLYSL 288
           ++L  Y S  I NN L+T   +L      H F +T L K + L
Sbjct: 6   RILILYISLSIDNNYLVTTLISLKENVFLHIFTLTFLFKAFLL 48


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 202 YFEIISQF*ILLYYVITCFSEHRACTFYI 116
           +  I++QF  LLY+ I+ + E+   T Y+
Sbjct: 141 FSSILTQFASLLYFYISTWEEYHTGTLYL 169


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 445 YKKKLQYIYRNYYTLIHQTK 386
           Y  K  +IYR Y T+ HQ K
Sbjct: 178 YLAKYTHIYRYYQTIYHQAK 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,409,609
Number of Sequences: 5004
Number of extensions: 45370
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)