Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0001
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    35   0.009
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    35   0.009
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    34   0.016
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    32   0.088
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    30   0.27 
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    30   0.27 
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    30   0.27 
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    30   0.27 
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    30   0.35 
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    30   0.35 
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...    29   0.47 
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   1.1  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   1.9  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    27   3.3  
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    26   4.4  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   4.4  
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.4  
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    26   5.8  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    26   5.8  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    25   7.6  

>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 126 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVW 227
           D S  +YVGN+ +  S  EI K FSKYG + +++
Sbjct: 14  DESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIF 47


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 227 GSSKSARICIVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMS 349
           GSSK    C  EF++P DAE ++ GLDG    G ++  + +
Sbjct: 348 GSSKG--FCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV 230
           +YV NL    S   I  +FS YGN++++W+
Sbjct: 2   LYVSNLPVGTSSSAIHALFSAYGNVKDIWM 31


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 31.9 bits (69), Expect = 0.088
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +2

Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
           VE ED RDA D V    G    G+RI VE + G
Sbjct: 42  VEVEDARDARDIVNDFQGKEFMGSRIVVEPARG 74


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA 254
           +VYVGNL      +E+++   + GN+ N  +   P G +
Sbjct: 67  RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLS 105


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +3

Query: 126 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP 242
           +L   ++V  + +   + E+++IFSK+G + +V + R P
Sbjct: 98  NLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREP 136


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 132 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNV 224
           S  V++GNL ++  + EIE+ F K+G I ++
Sbjct: 298 SRNVFIGNLPSSYHEKEIEEAFGKFGKIEHI 328


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +3

Query: 126 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNV 224
           +L  ++YVG L ++    ++E  FS++G++ N+
Sbjct: 2   ELEKRIYVGGLSSSIESSDLESRFSRFGSVSNL 34


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 135 CKVYVGNLGTN--ASKYEIEKIFSKYGNIRNVWVARNP 242
           C ++V NL  N   +  ++E++FSK+G I++  +A  P
Sbjct: 419 CNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYP 456



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 141 VYVGNLGTNASKYEIEKIFSKYGN 212
           +YVGNL +     ++ ++F  +GN
Sbjct: 22  IYVGNLPSTCQSSDLHELFEPFGN 45


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 120 EWDLS-CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 248
           EWD +  +++VGNLG + +   + + FS+Y ++    V R+  G
Sbjct: 24  EWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREG 67


>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNV 224
           VYVGNL    ++ +I  +FSK G IR +
Sbjct: 34  VYVGNLSFYTTEEQIYALFSKCGEIRRI 61


>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSN 352
           VEF++P DA++++  ++ +  C   IRV  +N
Sbjct: 51  VEFDEPEDAKEAMENMNYSILCDRCIRVSPAN 82


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 132 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP 242
           SC VYVGN+    ++ ++  IF + G +++  +  +P
Sbjct: 4   SCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDP 40


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNV 224
           +YV N      + +I K+FS YGN+ +V
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDV 695


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/44 (25%), Positives = 28/44 (63%)
 Frame = +3

Query: 108 SRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 239
           S ++++  S  +Y+GNL  + ++ +I  +FS++G   ++ + R+
Sbjct: 22  SWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRD 65


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 239 SARICIVEFEDPRDAEDSVRGLDGTR 316
           S     VE+ED RDAED+   + G R
Sbjct: 46  SRPFAFVEYEDSRDAEDAYYEVHGRR 71


>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 122

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +1

Query: 97  KLRCLATENGIFLAKCT---WATWVLMRLNMK*KKYF 198
           KL  +AT + IF    +   W+TWVL R  +K   +F
Sbjct: 5   KLANVATVDAIFAISSSTFLWSTWVLQRTILKRPNFF 41


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP 242
           V+VGNL   A +  + + F   G+I  V + R+P
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDP 305


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 594 HMTRFKTISLSHCSF*ICTTSQY 526
           H+  + ++ L  C F IC+T+QY
Sbjct: 96  HLKYYLSLYLPSCKFEICSTNQY 118


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 77  KIIHNISLNLIFYCSKQPFVS 15
           K++H+ISLN + Y SK    S
Sbjct: 70  KLVHHISLNNVSYASKASITS 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,069
Number of Sequences: 5004
Number of extensions: 46672
Number of successful extensions: 153
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)