Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a17
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    28   1.7  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    27   2.3  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    27   2.3  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    26   6.9  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    26   6.9  
SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   9.1  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    25   9.1  

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 404 QPPGHGEDGDCNMPHEPDQPRQVFGHVLNSSRQDV 508
           +PP   EDG   M  +P +  ++   V++S+  DV
Sbjct: 235 EPPEDSEDGISEMNEDPSESGEMIEQVISSTMNDV 269


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 474 LDTCLTQVDKMSESDKLKRCASSEQ-GDNLLASYGDKTDAVMRPLAFVPTVIINEKYDKD 650
           L   +   D+ S +  L+  AS     DNLL S+  +  A +  LA+     I EK++K+
Sbjct: 166 LGASIGNFDRKSAASFLRSFASRLNIHDNLLISFDHRNKAELVQLAYDDPYRITEKFEKN 225

Query: 651 V 653
           +
Sbjct: 226 I 226


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 592 TASVLSPYDASRLSPCSLDAHLFSLSDSDILST*VKHV 479
           T SVL  ++ S  S C+L   LF     D+LS   K V
Sbjct: 58  TTSVLKHHNVSNTSYCNLSPSLFIKFAEDVLSNLAKRV 95


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 594 SQHPFYHRTTRADCLLVHWMRIFSVYPTPTSC 499
           S +P    TT  + L ++W++  S + T +SC
Sbjct: 424 SHNPLASLTTDKNDLYINWLKSLSFFQTNSSC 455


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -3

Query: 526 FSLSDSDILST*VKHVSKDLSGLVWFMRHITISIFSVS 413
           + + +SDI S   KH+  D+S + W    + +   +++
Sbjct: 434 YPVDESDITSLFQKHIMSDISAIPWIDEPVEVETKTIA 471


>SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 139

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 92 VLYQEKKRFNDFFETPAHCNVTTS 21
          VLY E K F D+   P+  ++TTS
Sbjct: 13 VLYPEAKEFFDYPTIPSDSSITTS 36


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 540 SEQGDNLLASYGDKTDA-VMRPLAFVPTVIINEKYDKDVETQAFENLKAVVCRVATPQPS 716
           S  G  L    G  T+  VMR L+ V      +KYDK+   Q+  N KA+  RV  P  S
Sbjct: 2   SYNGIGLPTPRGSGTNGYVMRNLSHV------KKYDKNTNLQSNRNAKALEKRVQDPSIS 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,251,853
Number of Sequences: 5004
Number of extensions: 68539
Number of successful extensions: 189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)