Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a06
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    29   0.94 
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    28   1.2  
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe...    28   1.6  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    27   2.9  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    26   5.0  
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    26   5.0  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    26   6.6  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    25   8.8  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   8.8  
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom...    25   8.8  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    25   8.8  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   8.8  

>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +1

Query: 319 KKAHSKK--RKPFDVLKHRLAGTEAEPFINKLRKTTATPSTTKVNK 450
           +K+H+KK   KP  V+ +R+     +PF ++ ++ T+ PS+   NK
Sbjct: 593 QKSHAKKLQSKPSSVVPNRIT---TDPFSSQTKEATSKPSSISPNK 635


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 611 IAIAGSTRALPSDTFRSAQTFSSTNRSRPLND 706
           I I G+  ++PS  F+S +TF S   S   ND
Sbjct: 325 INIVGNNDSIPSQNFKSGKTFVSNANSSNSND 356


>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 21/92 (22%), Positives = 40/92 (43%)
 Frame = +1

Query: 289 DRIAKHQEICKKAHSKKRKPFDVLKHRLAGTEAEPFINKLRKTTATPSTTKVNKGKQLNS 468
           ++I + Q+  K  H K +   +  K R    E +P   +LR +   P+T + +K     +
Sbjct: 6   NKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKKRLRLSENIPATIE-SKRVYDET 64

Query: 469 NWRQKHEEFIQAIRAAKQVQAHLNAGGKLSDL 564
               K +E +QA     +  A+ +   K+  L
Sbjct: 65  IIEDKPDEELQAELKDDEFSAYFSEERKVPKL 96


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 391 PFINKLRKTTATPSTTKVNKG 453
           P + K++K  + PSTT VN+G
Sbjct: 422 PLLEKIKKQGSLPSTTPVNEG 442


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 325 AHSKKRKPFDVLKHRLAGTEAEPFINKLRKTTATPSTTKVNK 450
           A  K +     L   L+ +  +PF+NK   +T  PS  ++ K
Sbjct: 94  AGKKSKNYLSALSLLLSNSNVQPFVNKFYTSTVFPSFLQILK 135


>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 592 DYVQCPHCNRRFNQGAAERHIPKCANFQFNKPK 690
           DYV C  C+R F     E H   C   +  KP+
Sbjct: 80  DYVVCTKCDRPFLSEYIEDHHSSCNGIKPPKPQ 112


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +1

Query: 118 TRGAMQRPANTTPRKPPV--KANSAGSGTP 201
           + G+  R  NT P  PPV  K N   S TP
Sbjct: 177 SNGSFPRQTNTAPLNPPVHLKDNIRNSATP 206


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 103 SETNKTRGAMQRPANTTPRKPPVKANSAGSGTPKG 207
           +ET+     +Q+P  T P+KPPV A+  G    +G
Sbjct: 70  TETDIEMQVIQQP--TIPKKPPVSAHRRGPRKHRG 102


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 299 LNTRRSAKRPTARRGNPLMYSNIVW 373
           LNT +S   P   + NPL++ ++ W
Sbjct: 678 LNTAQSENLPIYEQENPLLFDSLSW 702


>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 256 ACGVCGRHFASDRIAKHQEICK 321
           +C +C R  A+ R A H E CK
Sbjct: 73  SCLMCKREIAASRYAAHLEKCK 94


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 610 HCNRRFNQGAAERHIPKCANF 672
           HC+R  ++G  ERH+P   NF
Sbjct: 320 HCSR--DEGTIERHLPPLFNF 338


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 583 ENPDY-VQCPHCNRRFNQGAAERHIPKCANFQFNKPKPAAK 702
           + P Y + CP C     QGA  +HIP   N +F + +P+++
Sbjct: 279 QQPFYPIVCPGCA----QGALPQHIPVPHNTEFAQYQPSSR 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,636
Number of Sequences: 5004
Number of extensions: 48326
Number of successful extensions: 177
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)