Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a02
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    32   0.076
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    30   0.30 
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    28   1.6  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   6.6  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   8.7  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    25   8.7  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    25   8.7  

>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 32.3 bits (70), Expect = 0.076
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 331 PNTTPPRVKLSKITFQSTNKVNGKIYRSVTLEKRKVTGKPAPHAENVKRKPEKKFNQKI 507
           P  TPPR  L+     S + ++  +      + RKV+G   P A  +      KFN+K+
Sbjct: 360 PLATPPRHPLNATNGTSQSNISTPLPEPTPGQPRKVSGHNPPSARRLPSASSVKFNEKL 418


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +1

Query: 349 RVKLS-KI-TFQSTNKVNGKIYRSVTLEKRKVTGKPAPHAENVKRKPEK-KFNQKIFA 513
           R KL+ KI TF+S  K   K+ R++ L++RK   K    A+ + +K  K K   K+ A
Sbjct: 11  RAKLAEKIQTFRSQRKATEKVDRALLLQRRKEKAKARAEAKKLAKKESKAKQESKVAA 68


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 379 STNKVNGKIYRSVTLEKRKVTGKPAPHAENVKRKP 483
           +++K   K + SV   K+KVT  PAP  E+   KP
Sbjct: 277 ASSKPIKKAWASVAKSKKKVTPAPAPAPESEPSKP 311


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = -3

Query: 633 IVDLFTGASTIETISSLANQRHTLVITPQRTSYKGINCNVCKDFLIKFFLRFSFDVFSVW 454
           I+ L TGAS+     +  +   T+ ITP   S KG        FL  F   F F +FS+W
Sbjct: 451 ILTLDTGASSESNPDAGTDDGDTVTITPATKSDKG-----WAGFL-TFAFSFVFLLFSIW 504


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1190

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = +1

Query: 409  RSVTLEKRKVTGKPAPHAENVKRKPEKKFNQKIFADIAVNTLVTGPLRCDNECVT 573
            +S  L  +   G P+  A  V        +    ADI V+TL+T P    N   T
Sbjct: 1046 QSPLLNGKSPVGVPSEAALRVSTDVSTNISSNGRADIPVDTLITSPADVPNNAPT 1100


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 494 NFFSGFLLTFSACGAGLPVTFLFSKV 417
           NFF GF + F A   G+  TFL + V
Sbjct: 371 NFFPGFTIYFPALFLGVVGTFLIAPV 396


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 579 NQRHTLVITPQRTSYKGINC 520
           N RHT  +   R +YKG NC
Sbjct: 350 NIRHTYGLEGNRKNYKGYNC 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,828
Number of Sequences: 5004
Number of extensions: 46161
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)